RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 TRAPPC1Q9Y5R8 145 aa11.44□□□□□ -0.58
USHBP1-210ENST00000600286 A0A087WX48 190 aa11.43□□□□□ -0.58
USHBP1-210ENST00000600286 UBE2L6O14933 153 aa11.43□□□□□ -0.58
USHBP1-210ENST00000600286 GAS8-AS1O95177 125 aa11.43□□□□□ -0.58
USHBP1-210ENST00000600286 POLR2KP53803 58 aaKnown RBP11.43□□□□□ -0.58
USHBP1-210ENST00000600286 WFDC10BQ8IUB3 73 aa11.43□□□□□ -0.58
USHBP1-210ENST00000600286 CBLN2Q8IUK8 224 aa11.43□□□□□ -0.58
USHBP1-210ENST00000600286 C10orf126Q8N4M7 172 aa11.43□□□□□ -0.58
USHBP1-210ENST00000600286 TMEM243Q9BU79 118 aa11.43□□□□□ -0.58
USHBP1-210ENST00000600286 MRPL18Q9H0U6 180 aaKnown RBP11.43□□□□□ -0.58
USHBP1-210ENST00000600286 MAP1LC3AQ9H492 121 aa11.43□□□□□ -0.58
USHBP1-210ENST00000600286 TRBV27A0A0K0K1C4 114 aa11.42□□□□□ -0.58
USHBP1-210ENST00000600286 RPL32P62910 135 aaKnown RBP11.42□□□□□ -0.58
USHBP1-210ENST00000600286 IQCJQ1A5X6 159 aa11.42□□□□□ -0.58
USHBP1-210ENST00000600286 NBDYA0A0U1RRE5 68 aa11.41□□□□□ -0.58
USHBP1-210ENST00000600286 M0R2N4 97 aa11.41□□□□□ -0.58
USHBP1-210ENST00000600286 DNAH10OSP0CZ25 163 aa11.41□□□□□ -0.58
USHBP1-210ENST00000600286 RAB5AP20339 215 aa11.41□□□□□ -0.58
USHBP1-210ENST00000600286 LINC01556Q5JQF7 62 aa11.41□□□□□ -0.58
USHBP1-210ENST00000600286 CHCHD7Q9BUK0 85 aa11.41□□□□□ -0.58
USHBP1-210ENST00000600286 DNAH10Q8IVF4 4471 aa11.41□□□□□ -0.58
USHBP1-210ENST00000600286 NPYP01303 97 aa11.4□□□□□ -0.58
USHBP1-210ENST00000600286 SMAGPQ0VAQ4 97 aa11.4□□□□□ -0.58
USHBP1-210ENST00000600286 KIAA1644Q3SXP7 199 aa11.4□□□□□ -0.58
USHBP1-210ENST00000600286 NTM-AS1Q6ZSK4 140 aa11.39□□□□□ -0.59
USHBP1-210ENST00000600286 NIT1Q86X76 327 aa11.39□□□□□ -0.59
USHBP1-210ENST00000600286 TMEM18Q96B42 140 aa11.39□□□□□ -0.59
USHBP1-210ENST00000600286 SMIM2Q9BVW6 85 aa11.39□□□□□ -0.59
USHBP1-210ENST00000600286 LOC389332A0A1B0GUA5 103 aa11.38□□□□□ -0.59
USHBP1-210ENST00000600286 H7C423 109 aa11.38□□□□□ -0.59
USHBP1-210ENST00000600286 IGHV3-30P01768 117 aa11.38□□□□□ -0.59
USHBP1-210ENST00000600286 IGHV3-33P01772 117 aa11.38□□□□□ -0.59
USHBP1-210ENST00000600286 IGHV3-30-3P0DP02 117 aa11.38□□□□□ -0.59
USHBP1-210ENST00000600286 IGHV3-30-5P0DP03 117 aa11.38□□□□□ -0.59
USHBP1-210ENST00000600286 GAGE6Q13070 117 aa11.38□□□□□ -0.59
USHBP1-210ENST00000600286 DEFB104AQ8WTQ1 72 aa11.38□□□□□ -0.59
USHBP1-210ENST00000600286 ATP6V1G1O75348 118 aa11.37□□□□□ -0.59
USHBP1-210ENST00000600286 BTF3P20290 206 aaKnown RBP11.37□□□□□ -0.59
USHBP1-210ENST00000600286 AMMECR1LQ6DCA0 310 aa11.37□□□□□ -0.59
USHBP1-210ENST00000600286 YPEL4Q96NS1 127 aa11.37□□□□□ -0.59
USHBP1-210ENST00000600286 NXT2Q9NPJ8 142 aaKnown RBP11.37□□□□□ -0.59
USHBP1-210ENST00000600286 PRSS47A8MTI9 375 aa11.36□□□□□ -0.59
USHBP1-210ENST00000600286 TSHBP01222 138 aa11.36□□□□□ -0.59
USHBP1-210ENST00000600286 PRSS3P2Q8NHM4 247 aa11.36□□□□□ -0.59
USHBP1-210ENST00000600286 ALKBH7Q9BT30 221 aaPredicted RBP11.36□□□□□ -0.59
USHBP1-210ENST00000600286 Q8N8P6 123 aa11.35□□□□□ -0.59
USHBP1-210ENST00000600286 TMEM101Q96IK0 257 aa11.35□□□□□ -0.59
USHBP1-210ENST00000600286 K7EMI3 77 aa11.34□□□□□ -0.59
USHBP1-210ENST00000600286 G0S2P27469 103 aa11.34□□□□□ -0.59
USHBP1-210ENST00000600286 C1orf134Q5TEV5 83 aa11.34□□□□□ -0.59
USHBP1-210ENST00000600286 Q6ZR54 194 aa11.34□□□□□ -0.59
USHBP1-210ENST00000600286 NFE4Q86UQ8 179 aa11.34□□□□□ -0.59
USHBP1-210ENST00000600286 A0A1B0GUV1 79 aa11.33□□□□□ -0.6
USHBP1-210ENST00000600286 ANGP03950 147 aaKnown RBP11.33□□□□□ -0.6
USHBP1-210ENST00000600286 ORMDL2Q53FV1 153 aa11.33□□□□□ -0.6
USHBP1-210ENST00000600286 DGAT2L7PQ6IED9 249 aa11.33□□□□□ -0.6
USHBP1-210ENST00000600286 RNASEKQ6P5S7 137 aaKnown RBP11.33□□□□□ -0.6
USHBP1-210ENST00000600286 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.32□□□□□ -0.6
USHBP1-210ENST00000600286 TRAV8-3A0A0A6YYJ7 113 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 IGKV2-29A2NJV5 120 aaPredicted RBP11.32□□□□□ -0.6
USHBP1-210ENST00000600286 IBA57-AS1B1ANH7 110 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 SCO1O75880 301 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 CRPP02741 224 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 ESDP10768 282 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 RBX1P62877 108 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 LAGE3Q14657 143 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 MPV17L2Q567V2 206 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 C6orf223Q8N319 242 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 KLK12Q9UKR0 248 aa11.32□□□□□ -0.6
USHBP1-210ENST00000600286 HECTD4Q9Y4D8 3996 aa11.31□□□□□ -0.6
USHBP1-210ENST00000600286 COLCA2A8K830 154 aa11.31□□□□□ -0.6
USHBP1-210ENST00000600286 ZNF25P17030 456 aaPredicted RBP11.31□□□□□ -0.6
USHBP1-210ENST00000600286 Q0VG73 95 aa11.31□□□□□ -0.6
USHBP1-210ENST00000600286 FA2HQ7L5A8 372 aa11.31□□□□□ -0.6
USHBP1-210ENST00000600286 RMI2Q96E14 147 aa11.31□□□□□ -0.6
USHBP1-210ENST00000600286 FGF6P10767 208 aa11.3□□□□□ -0.6
USHBP1-210ENST00000600286 IFI27P40305 119 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-210ENST00000600286 RAB5BP61020 215 aa11.3□□□□□ -0.6
USHBP1-210ENST00000600286 Q8N976 141 aa11.29□□□□□ -0.6
USHBP1-210ENST00000600286 C20orf203Q8NBC4 194 aa11.29□□□□□ -0.6
USHBP1-210ENST00000600286 OR5A1Q8NGJ0 315 aa11.29□□□□□ -0.6
USHBP1-210ENST00000600286 UBE2WQ96B02 151 aa11.29□□□□□ -0.6
USHBP1-210ENST00000600286 TM2D2Q9BX73 214 aa11.29□□□□□ -0.6
USHBP1-210ENST00000600286 TRGC2P03986 189 aa11.28□□□□□ -0.6
USHBP1-210ENST00000600286 Q9HAA7 133 aa11.28□□□□□ -0.6
USHBP1-210ENST00000600286 COX11Q9Y6N1 276 aa11.28□□□□□ -0.6
USHBP1-210ENST00000600286 FAT2Q9NYQ8 4349 aa11.27□□□□□ -0.61
USHBP1-210ENST00000600286 LINC01549A6NIU2 74 aa11.27□□□□□ -0.61
USHBP1-210ENST00000600286 MRPL52Q86TS9 123 aaKnown RBP11.27□□□□□ -0.61
USHBP1-210ENST00000600286 Q8N3U1 123 aa11.27□□□□□ -0.61
USHBP1-210ENST00000600286 KRTAP1-5Q9BYS1 174 aa11.27□□□□□ -0.61
USHBP1-210ENST00000600286 CYSLTR1Q9Y271 337 aa11.27□□□□□ -0.61
USHBP1-210ENST00000600286 PSCAO43653 123 aa11.26□□□□□ -0.61
USHBP1-210ENST00000600286 LINC00269Q8N2A0 174 aa11.26□□□□□ -0.61
USHBP1-210ENST00000600286 TIMM21Q9BVV7 248 aa11.26□□□□□ -0.61
USHBP1-210ENST00000600286 SPANXA1Q9NS26 97 aa11.26□□□□□ -0.61
USHBP1-210ENST00000600286 LINC00614P0C842 121 aa11.25□□□□□ -0.61
USHBP1-210ENST00000600286 MIAQ16674 131 aa11.25□□□□□ -0.61
USHBP1-210ENST00000600286 LINC00336Q6ZUF6 198 aa11.25□□□□□ -0.61
USHBP1-210ENST00000600286 C18orf32Q8TCD1 76 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms