RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 CLPSL2Q6UWE3 100 aa10.25□□□□□ -0.77
VRK3-221ENST00000600284 C20orf203Q8NBC4 194 aa10.25□□□□□ -0.77
VRK3-221ENST00000600284 CIRBP-AS1Q8TBR5 109 aa10.25□□□□□ -0.77
VRK3-221ENST00000600284 DEFB104AQ8WTQ1 72 aa10.25□□□□□ -0.77
VRK3-221ENST00000600284 ALKAL2Q6UX46 152 aa10.24□□□□□ -0.77
VRK3-221ENST00000600284 FAM231DQ6ZW35 169 aa10.24□□□□□ -0.77
VRK3-221ENST00000600284 SMIM15Q7Z3B0 74 aa10.24□□□□□ -0.77
VRK3-221ENST00000600284 C9orf163Q8N9P6 203 aa10.24□□□□□ -0.77
VRK3-221ENST00000600284 UBE2L6O14933 153 aa10.23□□□□□ -0.77
VRK3-221ENST00000600284 NDUFS6O75380 124 aaKnown RBP10.23□□□□□ -0.77
VRK3-221ENST00000600284 TEX261Q6UWH6 196 aa10.23□□□□□ -0.77
VRK3-221ENST00000600284 GATD1Q8NB37 220 aa10.23□□□□□ -0.77
VRK3-221ENST00000600284 IGLV4-60A0A075B6I1 120 aa10.22□□□□□ -0.77
VRK3-221ENST00000600284 A8MWL6 223 aa10.22□□□□□ -0.77
VRK3-221ENST00000600284 GATCO43716 136 aaKnown RBP10.22□□□□□ -0.77
VRK3-221ENST00000600284 AMTP48728 403 aa10.22□□□□□ -0.77
VRK3-221ENST00000600284 FOXA3P55318 350 aaPredicted RBP10.22□□□□□ -0.77
VRK3-221ENST00000600284 GTSF1Q8WW33 167 aa10.22□□□□□ -0.77
VRK3-221ENST00000600284 IGLV10-54A0A075B6I4 117 aa10.21□□□□□ -0.77
VRK3-221ENST00000600284 NCR2O95944 276 aa10.21□□□□□ -0.77
VRK3-221ENST00000600284 CT83Q5H943 113 aa10.21□□□□□ -0.77
VRK3-221ENST00000600284 KRTAP29-1A8MX34 341 aaPredicted RBP10.2□□□□□ -0.78
VRK3-221ENST00000600284 H7C423 109 aa10.2□□□□□ -0.78
VRK3-221ENST00000600284 J3QL48 77 aa10.2□□□□□ -0.78
VRK3-221ENST00000600284 GFRA4Q9GZZ7 299 aa10.2□□□□□ -0.78
VRK3-221ENST00000600284 TRAV26-2A0A0B4J265 109 aa10.19□□□□□ -0.78
VRK3-221ENST00000600284 KRTAP10-4P60372 401 aaPredicted RBP10.19□□□□□ -0.78
VRK3-221ENST00000600284 CNBPP62633 177 aaKnown RBP10.19□□□□□ -0.78
VRK3-221ENST00000600284 FAM210AQ96ND0 272 aa10.19□□□□□ -0.78
VRK3-221ENST00000600284 hCG_2014768A0A024R1R8 64 aa10.18□□□□□ -0.78
VRK3-221ENST00000600284 SDIM1Q6ZPB5 146 aa10.18□□□□□ -0.78
VRK3-221ENST00000600284 EIF5A2Q9GZV4 153 aaKnown RBP10.18□□□□□ -0.78
VRK3-221ENST00000600284 hDV102S1A0JD36 115 aa10.17□□□□□ -0.78
VRK3-221ENST00000600284 FAM231BA6NCW3 169 aa10.17□□□□□ -0.78
VRK3-221ENST00000600284 BORCS7Q96B45 105 aa10.17□□□□□ -0.78
VRK3-221ENST00000600284 RPL39LQ96EH5 51 aaKnown RBP10.17□□□□□ -0.78
VRK3-221ENST00000600284 AP5S1Q9NUS5 200 aa10.17□□□□□ -0.78
VRK3-221ENST00000600284 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.16□□□□□ -0.78
VRK3-221ENST00000600284 TRBV6-5A0A0K0K1A5 114 aa10.16□□□□□ -0.78
VRK3-221ENST00000600284 SDHAF1A6NFY7 115 aa10.16□□□□□ -0.78
VRK3-221ENST00000600284 CEBPGP53567 150 aa10.16□□□□□ -0.78
VRK3-221ENST00000600284 SMIM7Q9BQ49 75 aa10.16□□□□□ -0.78
VRK3-221ENST00000600284 APCSP02743 223 aa10.15□□□□□ -0.78
VRK3-221ENST00000600284 AMMECR1LQ6DCA0 310 aa10.15□□□□□ -0.78
VRK3-221ENST00000600284 CFAP161Q6P656 301 aa10.15□□□□□ -0.78
VRK3-221ENST00000600284 LINC01551Q86U37 167 aa10.15□□□□□ -0.78
VRK3-221ENST00000600284 TSKUQ8WUA8 353 aa10.15□□□□□ -0.78
VRK3-221ENST00000600284 OSTCQ9NRP0 149 aa10.15□□□□□ -0.78
VRK3-221ENST00000600284 A0A1B0GUT8 65 aa10.14□□□□□ -0.79
VRK3-221ENST00000600284 I3L3M4 83 aa10.14□□□□□ -0.79
VRK3-221ENST00000600284 ZNF25P17030 456 aaPredicted RBP10.14□□□□□ -0.79
VRK3-221ENST00000600284 CIRBPQ14011 172 aaKnown RBP10.14□□□□□ -0.79
VRK3-221ENST00000600284 TMEM191AQ9H0A3 160 aa10.14□□□□□ -0.79
VRK3-221ENST00000600284 IGHV3-64A0A075B6Q5 118 aa10.13□□□□□ -0.79
VRK3-221ENST00000600284 GAGE12HA6NDE8 117 aa10.13□□□□□ -0.79
VRK3-221ENST00000600284 ZNF727A8MUV8 499 aa10.13□□□□□ -0.79
VRK3-221ENST00000600284 HIGD1CA8MV81 97 aa10.13□□□□□ -0.79
VRK3-221ENST00000600284 PMCHP20382 165 aa10.13□□□□□ -0.79
VRK3-221ENST00000600284 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.13□□□□□ -0.79
VRK3-221ENST00000600284 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.12□□□□□ -0.79
VRK3-221ENST00000600284 IGKV2-29A2NJV5 120 aaPredicted RBP10.12□□□□□ -0.79
VRK3-221ENST00000600284 OXTP01178 125 aa10.12□□□□□ -0.79
VRK3-221ENST00000600284 SLPIP03973 132 aa10.12□□□□□ -0.79
VRK3-221ENST00000600284 SRP19P09132 144 aaKnown RBP10.12□□□□□ -0.79
VRK3-221ENST00000600284 FGF6P10767 208 aa10.12□□□□□ -0.79
VRK3-221ENST00000600284 RPL37AP61513 92 aaKnown RBP10.12□□□□□ -0.79
VRK3-221ENST00000600284 RNASEKQ6P5S7 137 aaKnown RBP10.12□□□□□ -0.79
VRK3-221ENST00000600284 ST20Q9HBF5 79 aa10.12□□□□□ -0.79
VRK3-221ENST00000600284 C15orf56Q8N910 161 aa10.11□□□□□ -0.79
VRK3-221ENST00000600284 CHCHD10Q8WYQ3 142 aaPredicted RBP10.11□□□□□ -0.79
VRK3-221ENST00000600284 RNF185Q96GF1 192 aa10.11□□□□□ -0.79
VRK3-221ENST00000600284 IGKV3OR2-268A0A0C4DH90 116 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 PANO1I0J062 215 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 ESDP10768 282 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 RAB4AP20338 218 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 FAM74A3Q4VXF1 159 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 OR5A1Q8NGJ0 315 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 MRAP2Q96G30 205 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 TMEM101Q96IK0 257 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 BTF3L4Q96K17 158 aa10.1□□□□□ -0.79
VRK3-221ENST00000600284 TRBV27A0A0K0K1C4 114 aa10.09□□□□□ -0.79
VRK3-221ENST00000600284 POLR2KP53803 58 aaKnown RBP10.09□□□□□ -0.79
VRK3-221ENST00000600284 RIGQ13278 110 aa10.09□□□□□ -0.79
VRK3-221ENST00000600284 V9GYV3 84 aa10.09□□□□□ -0.79
VRK3-221ENST00000600284 GAS8-AS1O95177 125 aa10.08□□□□□ -0.8
VRK3-221ENST00000600284 PPP1R17O96001 155 aa10.08□□□□□ -0.8
VRK3-221ENST00000600284 TSHBP01222 138 aa10.08□□□□□ -0.8
VRK3-221ENST00000600284 RPS10P46783 165 aaKnown RBP10.08□□□□□ -0.8
VRK3-221ENST00000600284 TMEM241Q24JQ0 296 aa10.08□□□□□ -0.8
VRK3-221ENST00000600284 MRPL52Q86TS9 123 aaKnown RBP10.07□□□□□ -0.8
VRK3-221ENST00000600284 AMN1Q8IY45 258 aa10.07□□□□□ -0.8
VRK3-221ENST00000600284 NUP35Q8NFH5 326 aa10.07□□□□□ -0.8
VRK3-221ENST00000600284 ISOC2Q96AB3 205 aa10.07□□□□□ -0.8
VRK3-221ENST00000600284 DPH3Q96FX2 82 aa10.07□□□□□ -0.8
VRK3-221ENST00000600284 TMEM242Q9NWH2 141 aa10.07□□□□□ -0.8
VRK3-221ENST00000600284 LRP1Q07954 4544 aaKnown RBP10.06□□□□□ -0.8
VRK3-221ENST00000600284 GVQW2A0A096LPI5 108 aaPredicted RBP10.06□□□□□ -0.8
VRK3-221ENST00000600284 VCYO14598 125 aa10.06□□□□□ -0.8
VRK3-221ENST00000600284 FOXI1Q12951 378 aa10.06□□□□□ -0.8
VRK3-221ENST00000600284 SPACA4Q8TDM5 124 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms