RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 FAM231BA6NCW3 169 aa12.36□□□□□ -0.43
PNKP-213ENST00000599543 F8W036 122 aa12.36□□□□□ -0.43
PNKP-213ENST00000599543 UQCC3Q6UW78 93 aa12.36□□□□□ -0.43
PNKP-213ENST00000599543 RPL39LQ96EH5 51 aaKnown RBP12.36□□□□□ -0.43
PNKP-213ENST00000599543 CHCHD7Q9BUK0 85 aa12.36□□□□□ -0.43
PNKP-213ENST00000599543 DNAH8Q96JB1 4490 aa12.35□□□□□ -0.43
PNKP-213ENST00000599543 GAS8-AS1O95177 125 aa12.35□□□□□ -0.43
PNKP-213ENST00000599543 ELOBQ15370 118 aa12.35□□□□□ -0.43
PNKP-213ENST00000599543 MRPL54Q6P161 138 aaKnown RBP12.35□□□□□ -0.43
PNKP-213ENST00000599543 LINC00862A6NCI5 91 aa12.34□□□□□ -0.43
PNKP-213ENST00000599543 H7C1H1 209 aa12.34□□□□□ -0.43
PNKP-213ENST00000599543 RIGQ13278 110 aa12.34□□□□□ -0.43
PNKP-213ENST00000599543 Q6ZSA8 131 aa12.34□□□□□ -0.43
PNKP-213ENST00000599543 AMN1Q8IY45 258 aa12.34□□□□□ -0.43
PNKP-213ENST00000599543 UBE2WQ96B02 151 aa12.34□□□□□ -0.43
PNKP-213ENST00000599543 CAMPP49913 170 aa12.33□□□□□ -0.44
PNKP-213ENST00000599543 PNRC1Q12796 327 aaPredicted RBP12.33□□□□□ -0.44
PNKP-213ENST00000599543 NTM-AS1Q6ZSK4 140 aa12.33□□□□□ -0.44
PNKP-213ENST00000599543 Q8N976 141 aa12.33□□□□□ -0.44
PNKP-213ENST00000599543 RNF185Q96GF1 192 aa12.33□□□□□ -0.44
PNKP-213ENST00000599543 DNAJC30Q96LL9 226 aa12.33□□□□□ -0.44
PNKP-213ENST00000599543 SMKR1H3BMG3 65 aa12.32□□□□□ -0.44
PNKP-213ENST00000599543 TMEM191AQ9H0A3 160 aa12.32□□□□□ -0.44
PNKP-213ENST00000599543 NIT2Q9NQR4 276 aa12.32□□□□□ -0.44
PNKP-213ENST00000599543 TRBV6-8A0A0A6YYG3 113 aa12.31□□□□□ -0.44
PNKP-213ENST00000599543 TMEM262E9PQX1 116 aa12.31□□□□□ -0.44
PNKP-213ENST00000599543 NCR2O95944 276 aa12.31□□□□□ -0.44
PNKP-213ENST00000599543 PLA2G1BP04054 148 aaKnown RBP12.31□□□□□ -0.44
PNKP-213ENST00000599543 Q0VG73 95 aa12.31□□□□□ -0.44
PNKP-213ENST00000599543 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.31□□□□□ -0.44
PNKP-213ENST00000599543 PPP1R2P9O14990 202 aa12.3□□□□□ -0.44
PNKP-213ENST00000599543 MT-ND4LP03901 98 aa12.3□□□□□ -0.44
PNKP-213ENST00000599543 RAB4AP20338 218 aa12.3□□□□□ -0.44
PNKP-213ENST00000599543 LINC01620Q4KN68 170 aa12.3□□□□□ -0.44
PNKP-213ENST00000599543 LINC00528Q8N1L1 170 aa12.3□□□□□ -0.44
PNKP-213ENST00000599543 CRPP02741 224 aa12.29□□□□□ -0.44
PNKP-213ENST00000599543 ATRAIDQ6UW56 229 aa12.29□□□□□ -0.44
PNKP-213ENST00000599543 C1orf43Q9BWL3 253 aa12.29□□□□□ -0.44
PNKP-213ENST00000599543 RPS10P46783 165 aaKnown RBP12.28□□□□□ -0.44
PNKP-213ENST00000599543 GAGE6Q13070 117 aa12.28□□□□□ -0.44
PNKP-213ENST00000599543 CHCHD5Q9BSY4 110 aa12.28□□□□□ -0.44
PNKP-213ENST00000599543 SEC11CQ9BY50 192 aa12.28□□□□□ -0.44
PNKP-213ENST00000599543 ANAPC16Q96DE5 110 aa12.27□□□□□ -0.45
PNKP-213ENST00000599543 A0A1B0GXF2 115 aa12.26□□□□□ -0.45
PNKP-213ENST00000599543 PKIAP61925 76 aa12.26□□□□□ -0.45
PNKP-213ENST00000599543 HBBP68871 147 aa12.26□□□□□ -0.45
PNKP-213ENST00000599543 MRPL51Q4U2R6 128 aaKnown RBP12.26□□□□□ -0.45
PNKP-213ENST00000599543 MPV17L2Q567V2 206 aa12.26□□□□□ -0.45
PNKP-213ENST00000599543 SCXQ7RTU7 201 aa12.26□□□□□ -0.45
PNKP-213ENST00000599543 ANGP03950 147 aaKnown RBP12.25□□□□□ -0.45
PNKP-213ENST00000599543 C14orf177Q52M58 125 aa12.25□□□□□ -0.45
PNKP-213ENST00000599543 FAM104BQ5XKR9 115 aa12.25□□□□□ -0.45
PNKP-213ENST00000599543 TRBV25-1A0A075B6N4 114 aa12.24□□□□□ -0.45
PNKP-213ENST00000599543 IGHV1-24A0A0C4DH33 117 aa12.24□□□□□ -0.45
PNKP-213ENST00000599543 SDHAF1A6NFY7 115 aa12.24□□□□□ -0.45
PNKP-213ENST00000599543 J3QL48 77 aa12.24□□□□□ -0.45
PNKP-213ENST00000599543 TMEM97Q5BJF2 176 aa12.24□□□□□ -0.45
PNKP-213ENST00000599543 ENHOQ6UWT2 76 aa12.24□□□□□ -0.45
PNKP-213ENST00000599543 MRAP2Q96G30 205 aa12.24□□□□□ -0.45
PNKP-213ENST00000599543 COTL1Q14019 142 aa12.23□□□□□ -0.45
PNKP-213ENST00000599543 CHAC1Q9BUX1 264 aa12.23□□□□□ -0.45
PNKP-213ENST00000599543 ST20Q9HBF5 79 aa12.23□□□□□ -0.45
PNKP-213ENST00000599543 A0A1B0GW15 77 aa12.22□□□□□ -0.45
PNKP-213ENST00000599543 HLA-DQA1P01909 254 aa12.22□□□□□ -0.45
PNKP-213ENST00000599543 AMTP48728 403 aa12.22□□□□□ -0.45
PNKP-213ENST00000599543 IQCJQ1A5X6 159 aa12.22□□□□□ -0.45
PNKP-213ENST00000599543 C10orf91Q5T1B1 145 aa12.22□□□□□ -0.45
PNKP-213ENST00000599543 NRACQ8N912 160 aa12.22□□□□□ -0.45
PNKP-213ENST00000599543 TMEM243Q9BU79 118 aa12.22□□□□□ -0.45
PNKP-213ENST00000599543 PMCHP20382 165 aa12.21□□□□□ -0.45
PNKP-213ENST00000599543 MIAQ16674 131 aa12.21□□□□□ -0.45
PNKP-213ENST00000599543 CLPSL2Q6UWE3 100 aa12.21□□□□□ -0.45
PNKP-213ENST00000599543 TMEM242Q9NWH2 141 aa12.21□□□□□ -0.45
PNKP-213ENST00000599543 CARHSP1Q9Y2V2 147 aaKnown RBP12.21□□□□□ -0.45
PNKP-213ENST00000599543 TRBV6-5A0A0K0K1A5 114 aa12.2□□□□□ -0.46
PNKP-213ENST00000599543 C7orf77A4D0Y5 90 aa12.2□□□□□ -0.46
PNKP-213ENST00000599543 RBX1P62877 108 aa12.2□□□□□ -0.46
PNKP-213ENST00000599543 CLRN3Q8NCR9 226 aa12.2□□□□□ -0.46
PNKP-213ENST00000599543 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.19□□□□□ -0.46
PNKP-213ENST00000599543 IGKV2-29A2NJV5 120 aaPredicted RBP12.19□□□□□ -0.46
PNKP-213ENST00000599543 D6R8Y8 96 aa12.19□□□□□ -0.46
PNKP-213ENST00000599543 S100A8P05109 93 aa12.19□□□□□ -0.46
PNKP-213ENST00000599543 CKS2P33552 79 aa12.19□□□□□ -0.46
PNKP-213ENST00000599543 ATP5L2Q7Z4Y8 100 aa12.19□□□□□ -0.46
PNKP-213ENST00000599543 CIRBP-AS1Q8TBR5 109 aa12.19□□□□□ -0.46
PNKP-213ENST00000599543 RPS10P5Q9NQ39 176 aa12.19□□□□□ -0.46
PNKP-213ENST00000599543 USP17L23D6RBM5 183 aa12.18□□□□□ -0.46
PNKP-213ENST00000599543 TSHBP01222 138 aa12.18□□□□□ -0.46
PNKP-213ENST00000599543 APOC3P02656 99 aa12.18□□□□□ -0.46
PNKP-213ENST00000599543 BTF3L4Q96K17 158 aa12.18□□□□□ -0.46
PNKP-213ENST00000599543 CTDSP1Q9GZU7 261 aa12.18□□□□□ -0.46
PNKP-213ENST00000599543 I3L3M4 83 aa12.17□□□□□ -0.46
PNKP-213ENST00000599543 APCSP02743 223 aa12.17□□□□□ -0.46
PNKP-213ENST00000599543 POLR2KP53803 58 aaKnown RBP12.17□□□□□ -0.46
PNKP-213ENST00000599543 SLC7A5P1Q8MH63 180 aa12.17□□□□□ -0.46
PNKP-213ENST00000599543 IGLV4-60A0A075B6I1 120 aa12.16□□□□□ -0.46
PNKP-213ENST00000599543 UBE2L6O14933 153 aa12.16□□□□□ -0.46
PNKP-213ENST00000599543 NPYP01303 97 aa12.16□□□□□ -0.46
PNKP-213ENST00000599543 LINC00269Q8N2A0 174 aa12.16□□□□□ -0.46
PNKP-213ENST00000599543 PRR34Q9NV39 138 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms