RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SMIM15Q7Z3B0 74 aa6.33□□□□□ -1.4
VRK3-216ENST00000599342 NUDT10Q8NFP7 164 aa6.33□□□□□ -1.4
VRK3-216ENST00000599342 NUDT11Q96G61 164 aa6.33□□□□□ -1.4
VRK3-216ENST00000599342 RPP21Q9H633 154 aaKnown RBP6.33□□□□□ -1.4
VRK3-216ENST00000599342 AP5S1Q9NUS5 200 aa6.33□□□□□ -1.4
VRK3-216ENST00000599342 SRRM2Q9UQ35 2752 aaKnown RBP6.33□□□□□ -1.4
VRK3-216ENST00000599342 KRTAP10-4P60372 401 aaPredicted RBP6.32□□□□□ -1.4
VRK3-216ENST00000599342 RNASE7Q9H1E1 156 aaKnown RBP6.32□□□□□ -1.4
VRK3-216ENST00000599342 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.31□□□□□ -1.4
VRK3-216ENST00000599342 OXTP01178 125 aa6.31□□□□□ -1.4
VRK3-216ENST00000599342 CNBPP62633 177 aaKnown RBP6.31□□□□□ -1.4
VRK3-216ENST00000599342 CNFNQ9BYD5 112 aa6.31□□□□□ -1.4
VRK3-216ENST00000599342 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.31□□□□□ -1.4
VRK3-216ENST00000599342 IGHV3-64A0A075B6Q5 118 aa6.3□□□□□ -1.4
VRK3-216ENST00000599342 TRAV26-2A0A0B4J265 109 aa6.3□□□□□ -1.4
VRK3-216ENST00000599342 IGKV3OR2-268A0A0C4DH90 116 aa6.3□□□□□ -1.4
VRK3-216ENST00000599342 K7EN84 100 aa6.3□□□□□ -1.4
VRK3-216ENST00000599342 AMMECR1LQ6DCA0 310 aa6.3□□□□□ -1.4
VRK3-216ENST00000599342 GATD1Q8NB37 220 aa6.3□□□□□ -1.4
VRK3-216ENST00000599342 OCC1Q8TAD7 63 aa6.3□□□□□ -1.4
VRK3-216ENST00000599342 GFRA4Q9GZZ7 299 aa6.3□□□□□ -1.4
VRK3-216ENST00000599342 APCSP02743 223 aa6.29□□□□□ -1.4
VRK3-216ENST00000599342 SERTAD4-AS1Q5TG53 156 aa6.29□□□□□ -1.4
VRK3-216ENST00000599342 CFAP161Q6P656 301 aa6.29□□□□□ -1.4
VRK3-216ENST00000599342 TEX261Q6UWH6 196 aa6.29□□□□□ -1.4
VRK3-216ENST00000599342 SDIM1Q6ZPB5 146 aa6.29□□□□□ -1.4
VRK3-216ENST00000599342 BORCS7Q96B45 105 aa6.29□□□□□ -1.4
VRK3-216ENST00000599342 DPH3Q96FX2 82 aa6.29□□□□□ -1.4
VRK3-216ENST00000599342 A8MWL6 223 aa6.28□□□□□ -1.4
VRK3-216ENST00000599342 TMEM250H0YL14 139 aa6.28□□□□□ -1.4
VRK3-216ENST00000599342 PANO1I0J062 215 aa6.28□□□□□ -1.4
VRK3-216ENST00000599342 GATCO43716 136 aaKnown RBP6.28□□□□□ -1.4
VRK3-216ENST00000599342 NCR2O95944 276 aa6.28□□□□□ -1.4
VRK3-216ENST00000599342 CEBPGP53567 150 aa6.28□□□□□ -1.4
VRK3-216ENST00000599342 BLOC1S1P78537 153 aa6.28□□□□□ -1.4
VRK3-216ENST00000599342 RNASEKQ6P5S7 137 aaKnown RBP6.28□□□□□ -1.4
VRK3-216ENST00000599342 AKAP14Q86UN6 197 aa6.28□□□□□ -1.4
VRK3-216ENST00000599342 GTSF1Q8WW33 167 aa6.28□□□□□ -1.4
VRK3-216ENST00000599342 RPL39LQ96EH5 51 aaKnown RBP6.28□□□□□ -1.4
VRK3-216ENST00000599342 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.27□□□□□ -1.41
VRK3-216ENST00000599342 IGKV2-29A2NJV5 120 aaPredicted RBP6.27□□□□□ -1.41
VRK3-216ENST00000599342 GAGE12HA6NDE8 117 aa6.27□□□□□ -1.41
VRK3-216ENST00000599342 H7C423 109 aa6.27□□□□□ -1.41
VRK3-216ENST00000599342 ALKAL2Q6UX46 152 aa6.27□□□□□ -1.41
VRK3-216ENST00000599342 Q6ZNX1 250 aa6.27□□□□□ -1.41
VRK3-216ENST00000599342 SDHAF1A6NFY7 115 aa6.26□□□□□ -1.41
VRK3-216ENST00000599342 FGF6P10767 208 aa6.26□□□□□ -1.41
VRK3-216ENST00000599342 PMCHP20382 165 aa6.26□□□□□ -1.41
VRK3-216ENST00000599342 FOXA3P55318 350 aaPredicted RBP6.26□□□□□ -1.41
VRK3-216ENST00000599342 CIRBPQ14011 172 aaKnown RBP6.26□□□□□ -1.41
VRK3-216ENST00000599342 CT83Q5H943 113 aa6.26□□□□□ -1.41
VRK3-216ENST00000599342 FAM231DQ6ZW35 169 aa6.26□□□□□ -1.41
VRK3-216ENST00000599342 CHCHD10Q8WYQ3 142 aaPredicted RBP6.26□□□□□ -1.41
VRK3-216ENST00000599342 RNF185Q96GF1 192 aa6.26□□□□□ -1.41
VRK3-216ENST00000599342 BTF3L4Q96K17 158 aa6.26□□□□□ -1.41
VRK3-216ENST00000599342 A0A087WYN8 130 aa6.25□□□□□ -1.41
VRK3-216ENST00000599342 I3L3M4 83 aa6.25□□□□□ -1.41
VRK3-216ENST00000599342 SLPIP03973 132 aa6.25□□□□□ -1.41
VRK3-216ENST00000599342 CHTF8P0CG12 524 aa6.25□□□□□ -1.41
VRK3-216ENST00000599342 ZNF25P17030 456 aaPredicted RBP6.25□□□□□ -1.41
VRK3-216ENST00000599342 RPS10P46783 165 aaKnown RBP6.25□□□□□ -1.41
VRK3-216ENST00000599342 HNRNPA3P51991 378 aaKnown RBP6.25□□□□□ -1.41
VRK3-216ENST00000599342 HIGD2BQ4VC39 106 aa6.25□□□□□ -1.41
VRK3-216ENST00000599342 C15orf56Q8N910 161 aa6.25□□□□□ -1.41
VRK3-216ENST00000599342 SPACA4Q8TDM5 124 aa6.25□□□□□ -1.41
VRK3-216ENST00000599342 TMEM101Q96IK0 257 aa6.25□□□□□ -1.41
VRK3-216ENST00000599342 EIF5A2Q9GZV4 153 aaKnown RBP6.25□□□□□ -1.41
VRK3-216ENST00000599342 hCG_2014768A0A024R1R8 64 aa6.24□□□□□ -1.41
VRK3-216ENST00000599342 TRBV6-5A0A0K0K1A5 114 aa6.24□□□□□ -1.41
VRK3-216ENST00000599342 NDUFS6O75380 124 aaKnown RBP6.24□□□□□ -1.41
VRK3-216ENST00000599342 OR5A1Q8NGJ0 315 aa6.24□□□□□ -1.41
VRK3-216ENST00000599342 LYPD6BQ8NI32 183 aa6.24□□□□□ -1.41
VRK3-216ENST00000599342 C7orf33Q8WU49 177 aa6.24□□□□□ -1.41
VRK3-216ENST00000599342 MRAP2Q96G30 205 aa6.24□□□□□ -1.41
VRK3-216ENST00000599342 SMIM7Q9BQ49 75 aa6.24□□□□□ -1.41
VRK3-216ENST00000599342 ST20Q9HBF5 79 aa6.24□□□□□ -1.41
VRK3-216ENST00000599342 LRP1Q07954 4544 aaKnown RBP6.23□□□□□ -1.41
VRK3-216ENST00000599342 GVQW2A0A096LPI5 108 aaPredicted RBP6.23□□□□□ -1.41
VRK3-216ENST00000599342 A0A1B0GUT8 65 aa6.23□□□□□ -1.41
VRK3-216ENST00000599342 HIGD1CA8MV81 97 aa6.23□□□□□ -1.41
VRK3-216ENST00000599342 COX6A2Q02221 97 aa6.23□□□□□ -1.41
VRK3-216ENST00000599342 Q6ZRU5 148 aa6.23□□□□□ -1.41
VRK3-216ENST00000599342 LINC01551Q86U37 167 aa6.23□□□□□ -1.41
VRK3-216ENST00000599342 TSKUQ8WUA8 353 aa6.23□□□□□ -1.41
VRK3-216ENST00000599342 TMEM242Q9NWH2 141 aa6.23□□□□□ -1.41
VRK3-216ENST00000599342 FAT3Q8TDW7 4589 aa6.23□□□□□ -1.41
VRK3-216ENST00000599342 IGKV2-24A0A0C4DH68 120 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 ZNF727A8MUV8 499 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 XCL1P47992 114 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 FOXI1Q12951 378 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 MAJINQ3KP22 176 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 FAM210AQ96ND0 272 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 TMEM191AQ9H0A3 160 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 PLAC8Q9NZF1 115 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 PLA2G2DQ9UNK4 145 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 PKIGQ9Y2B9 76 aa6.22□□□□□ -1.41
VRK3-216ENST00000599342 LINC00959A0A1B0GUT2 108 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 C7orf77A4D0Y5 90 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 FAM231BA6NCW3 169 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 PHOX2AO14813 284 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms