RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RAB4AP20338 218 aa10.66□□□□□ -0.7
TRIM28-213ENST00000598355 GAGE6Q13070 117 aa10.66□□□□□ -0.7
TRIM28-213ENST00000598355 RIGQ13278 110 aa10.66□□□□□ -0.7
TRIM28-213ENST00000598355 COTL1Q14019 142 aa10.66□□□□□ -0.7
TRIM28-213ENST00000598355 SDHAF1A6NFY7 115 aa10.65□□□□□ -0.7
TRIM28-213ENST00000598355 NCR2O95944 276 aa10.65□□□□□ -0.7
TRIM28-213ENST00000598355 MIAQ16674 131 aa10.65□□□□□ -0.7
TRIM28-213ENST00000598355 AMN1Q8IY45 258 aa10.65□□□□□ -0.7
TRIM28-213ENST00000598355 C20orf203Q8NBC4 194 aa10.65□□□□□ -0.7
TRIM28-213ENST00000598355 MRAP2Q96G30 205 aa10.65□□□□□ -0.7
TRIM28-213ENST00000598355 IGKV2D-24A0A075B6R9 120 aa10.64□□□□□ -0.71
TRIM28-213ENST00000598355 AMTP48728 403 aa10.64□□□□□ -0.71
TRIM28-213ENST00000598355 PNRC1Q12796 327 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-213ENST00000598355 KRTAP26-1Q6PEX3 210 aa10.64□□□□□ -0.71
TRIM28-213ENST00000598355 KRTAP17-1Q9BYP8 105 aa10.64□□□□□ -0.71
TRIM28-213ENST00000598355 A0A1B0GW15 77 aa10.63□□□□□ -0.71
TRIM28-213ENST00000598355 A0A1B0GXF2 115 aa10.63□□□□□ -0.71
TRIM28-213ENST00000598355 CRPP02741 224 aa10.63□□□□□ -0.71
TRIM28-213ENST00000598355 RPS10P46783 165 aaKnown RBP10.63□□□□□ -0.71
TRIM28-213ENST00000598355 KRTAP10-1P60331 282 aa10.63□□□□□ -0.71
TRIM28-213ENST00000598355 TMEM70Q9BUB7 260 aa10.63□□□□□ -0.71
TRIM28-213ENST00000598355 C1orf43Q9BWL3 253 aa10.63□□□□□ -0.71
TRIM28-213ENST00000598355 IGLV4-60A0A075B6I1 120 aa10.62□□□□□ -0.71
TRIM28-213ENST00000598355 POLR2KP53803 58 aaKnown RBP10.62□□□□□ -0.71
TRIM28-213ENST00000598355 IGLV5-52A0A0A0MRZ9 124 aa10.61□□□□□ -0.71
TRIM28-213ENST00000598355 TRBV27A0A0K0K1C4 114 aa10.61□□□□□ -0.71
TRIM28-213ENST00000598355 FAM104BQ5XKR9 115 aa10.61□□□□□ -0.71
TRIM28-213ENST00000598355 LINC00269Q8N2A0 174 aa10.61□□□□□ -0.71
TRIM28-213ENST00000598355 NRACQ8N912 160 aa10.61□□□□□ -0.71
TRIM28-213ENST00000598355 DEFB104AQ8WTQ1 72 aa10.61□□□□□ -0.71
TRIM28-213ENST00000598355 BAALCQ8WXS3 180 aa10.61□□□□□ -0.71
TRIM28-213ENST00000598355 H7C423 109 aa10.6□□□□□ -0.71
TRIM28-213ENST00000598355 I3L3M4 83 aa10.6□□□□□ -0.71
TRIM28-213ENST00000598355 LECT2O14960 151 aa10.6□□□□□ -0.71
TRIM28-213ENST00000598355 PPP1R2P9O14990 202 aa10.6□□□□□ -0.71
TRIM28-213ENST00000598355 APCSP02743 223 aa10.6□□□□□ -0.71
TRIM28-213ENST00000598355 GCSHP23434 173 aa10.6□□□□□ -0.71
TRIM28-213ENST00000598355 REG3AQ06141 175 aa10.6□□□□□ -0.71
TRIM28-213ENST00000598355 TSHBP01222 138 aa10.59□□□□□ -0.71
TRIM28-213ENST00000598355 ESDP10768 282 aa10.59□□□□□ -0.71
TRIM28-213ENST00000598355 HBBP68871 147 aa10.59□□□□□ -0.71
TRIM28-213ENST00000598355 MRPL51Q4U2R6 128 aaKnown RBP10.59□□□□□ -0.71
TRIM28-213ENST00000598355 UQCC3Q6UW78 93 aa10.59□□□□□ -0.71
TRIM28-213ENST00000598355 CLPSL2Q6UWE3 100 aa10.59□□□□□ -0.71
TRIM28-213ENST00000598355 ST20Q9HBF5 79 aa10.59□□□□□ -0.71
TRIM28-213ENST00000598355 UBE2L6O14933 153 aa10.58□□□□□ -0.72
TRIM28-213ENST00000598355 PPP1R17O96001 155 aa10.58□□□□□ -0.72
TRIM28-213ENST00000598355 ADCYAP1P18509 176 aa10.58□□□□□ -0.72
TRIM28-213ENST00000598355 XGP55808 180 aa10.58□□□□□ -0.72
TRIM28-213ENST00000598355 ATP5L2Q7Z4Y8 100 aa10.58□□□□□ -0.72
TRIM28-213ENST00000598355 TRBV24-1A0A075B6N3 115 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 TRAV8-4A0A0B4J246 113 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 LINC00862A6NCI5 91 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 SMKR1H3BMG3 65 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 S100A8P05109 93 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 PMCHP20382 165 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 CAMPP49913 170 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 MRPL54Q6P161 138 aaKnown RBP10.57□□□□□ -0.72
TRIM28-213ENST00000598355 ANAPC16Q96DE5 110 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 TMEM242Q9NWH2 141 aa10.57□□□□□ -0.72
TRIM28-213ENST00000598355 ZNF25P17030 456 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-213ENST00000598355 SUMO2P61956 95 aaKnown RBP10.56□□□□□ -0.72
TRIM28-213ENST00000598355 RPL32P62910 135 aaKnown RBP10.56□□□□□ -0.72
TRIM28-213ENST00000598355 Q6ZSA8 131 aa10.56□□□□□ -0.72
TRIM28-213ENST00000598355 KRTAP4-5Q9BYR2 181 aa10.56□□□□□ -0.72
TRIM28-213ENST00000598355 PCLOQ9Y6V0 5065 aa10.55□□□□□ -0.72
TRIM28-213ENST00000598355 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-213ENST00000598355 IGKV2-29A2NJV5 120 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-213ENST00000598355 FGF6P10767 208 aa10.55□□□□□ -0.72
TRIM28-213ENST00000598355 C14orf177Q52M58 125 aa10.55□□□□□ -0.72
TRIM28-213ENST00000598355 Q8N1X5 172 aa10.55□□□□□ -0.72
TRIM28-213ENST00000598355 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.54□□□□□ -0.72
TRIM28-213ENST00000598355 TMEM218A2RU14 115 aa10.54□□□□□ -0.72
TRIM28-213ENST00000598355 USP17L23D6RBM5 183 aa10.54□□□□□ -0.72
TRIM28-213ENST00000598355 F8W036 122 aa10.54□□□□□ -0.72
TRIM28-213ENST00000598355 HLA-DQA1P01909 254 aa10.54□□□□□ -0.72
TRIM28-213ENST00000598355 MT-ND4LP03901 98 aa10.54□□□□□ -0.72
TRIM28-213ENST00000598355 MRPL52Q86TS9 123 aaKnown RBP10.54□□□□□ -0.72
TRIM28-213ENST00000598355 C20orf78Q9BR46 151 aa10.54□□□□□ -0.72
TRIM28-213ENST00000598355 VCYO14598 125 aa10.53□□□□□ -0.72
TRIM28-213ENST00000598355 DNAH8Q96JB1 4490 aa10.53□□□□□ -0.72
TRIM28-213ENST00000598355 IGLV10-54A0A075B6I4 117 aa10.52□□□□□ -0.73
TRIM28-213ENST00000598355 C7orf77A4D0Y5 90 aa10.52□□□□□ -0.73
TRIM28-213ENST00000598355 PHOX2AO14813 284 aa10.52□□□□□ -0.73
TRIM28-213ENST00000598355 PPBPP02775 128 aa10.52□□□□□ -0.73
TRIM28-213ENST00000598355 AMMECR1LQ6DCA0 310 aa10.52□□□□□ -0.73
TRIM28-213ENST00000598355 D6R8Y8 96 aa10.51□□□□□ -0.73
TRIM28-213ENST00000598355 CKS2P33552 79 aa10.51□□□□□ -0.73
TRIM28-213ENST00000598355 SEC11CQ9BY50 192 aa10.51□□□□□ -0.73
TRIM28-213ENST00000598355 FAM30AQ9NZY2 134 aa10.51□□□□□ -0.73
TRIM28-213ENST00000598355 TNFRSF6BO95407 300 aa10.5□□□□□ -0.73
TRIM28-213ENST00000598355 NPYP01303 97 aa10.5□□□□□ -0.73
TRIM28-213ENST00000598355 PRSS1P07477 247 aa10.5□□□□□ -0.73
TRIM28-213ENST00000598355 RNASEKQ6P5S7 137 aaKnown RBP10.5□□□□□ -0.73
TRIM28-213ENST00000598355 OR5A1Q8NGJ0 315 aa10.5□□□□□ -0.73
TRIM28-213ENST00000598355 IMMP2LQ96T52 175 aa10.5□□□□□ -0.73
TRIM28-213ENST00000598355 KIR2DL4Q99706 377 aa10.5□□□□□ -0.73
TRIM28-213ENST00000598355 SMIM2Q9BVW6 85 aa10.5□□□□□ -0.73
TRIM28-213ENST00000598355 CSDC2Q9Y534 153 aaKnown RBP10.5□□□□□ -0.73
TRIM28-213ENST00000598355 COMMD7Q86VX2 200 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms