RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PTTG1IPP53801 180 aa6.18□□□□□ -1.42
TRIM28-210ENST00000597618 FOXI1Q12951 378 aa6.18□□□□□ -1.42
TRIM28-210ENST00000597618 PRR4Q16378 134 aa6.18□□□□□ -1.42
TRIM28-210ENST00000597618 CST9LP1Q5W188 147 aa6.18□□□□□ -1.42
TRIM28-210ENST00000597618 RASL11AQ6T310 242 aa6.18□□□□□ -1.42
TRIM28-210ENST00000597618 S100ZQ8WXG8 99 aa6.18□□□□□ -1.42
TRIM28-210ENST00000597618 MARVELD1Q9BSK0 173 aa6.18□□□□□ -1.42
TRIM28-210ENST00000597618 MAP1LC3B2A6NCE7 125 aa6.17□□□□□ -1.42
TRIM28-210ENST00000597618 AMMECR1LQ6DCA0 310 aa6.17□□□□□ -1.42
TRIM28-210ENST00000597618 FER1L6-AS1Q8NA97 138 aa6.17□□□□□ -1.42
TRIM28-210ENST00000597618 DIRC1Q969H9 104 aa6.17□□□□□ -1.42
TRIM28-210ENST00000597618 MAP1LC3BQ9GZQ8 125 aa6.17□□□□□ -1.42
TRIM28-210ENST00000597618 NIT2Q9NQR4 276 aa6.17□□□□□ -1.42
TRIM28-210ENST00000597618 BORCS7-ASMTA0A0B4J1R7 106 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 IGHV1-58A0A0C4DH39 117 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 UPK1BO75841 260 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 SYCNQ0VAF6 134 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 C1orf137Q5JT78 98 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 AKR1C8PQ5T2L2 129 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 BAGE2Q86Y30 109 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 MLST8Q9BVC4 326 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 TPPP3Q9BW30 176 aa6.16□□□□□ -1.42
TRIM28-210ENST00000597618 IGLV1-50A0A075B6I6 118 aa6.15□□□□□ -1.42
TRIM28-210ENST00000597618 LOC107984640A0A0U1RRK4 108 aa6.15□□□□□ -1.42
TRIM28-210ENST00000597618 XCL1P47992 114 aa6.15□□□□□ -1.42
TRIM28-210ENST00000597618 GAGE2BQ13066 116 aa6.15□□□□□ -1.42
TRIM28-210ENST00000597618 RPL7L1Q6DKI1 246 aaKnown RBP6.15□□□□□ -1.42
TRIM28-210ENST00000597618 RNASEKQ6P5S7 137 aaKnown RBP6.15□□□□□ -1.42
TRIM28-210ENST00000597618 LINC00526Q96FQ7 95 aa6.15□□□□□ -1.42
TRIM28-210ENST00000597618 A0A1W2PNN7 141 aa6.14□□□□□ -1.43
TRIM28-210ENST00000597618 ZNF561-AS1K7EIQ3 104 aa6.14□□□□□ -1.43
TRIM28-210ENST00000597618 ISOC2Q96AB3 205 aa6.14□□□□□ -1.43
TRIM28-210ENST00000597618 SCO2A0A1W2PP80 73 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 H0Y9J4 135 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 H7C423 109 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 PAGE4O60829 102 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 NCR2O95944 276 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 IGLV7-43P04211 117 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 TRGC1P0CF51 173 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 IGLC6P0CF74 106 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 FGF6P10767 208 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 CAMPP49913 170 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 IFITM3Q01628 133 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 OR5A1Q8NGJ0 315 aa6.13□□□□□ -1.43
TRIM28-210ENST00000597618 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.12□□□□□ -1.43
TRIM28-210ENST00000597618 IGKV2-29A2NJV5 120 aaPredicted RBP6.12□□□□□ -1.43
TRIM28-210ENST00000597618 CCL25O15444 150 aa6.12□□□□□ -1.43
TRIM28-210ENST00000597618 PFDN1O60925 122 aa6.12□□□□□ -1.43
TRIM28-210ENST00000597618 ZNF25P17030 456 aaPredicted RBP6.12□□□□□ -1.43
TRIM28-210ENST00000597618 NTF3P20783 257 aa6.12□□□□□ -1.43
TRIM28-210ENST00000597618 RPS20P60866 119 aaKnown RBP6.12□□□□□ -1.43
TRIM28-210ENST00000597618 C9orf116Q5BN46 136 aaPredicted RBP6.12□□□□□ -1.43
TRIM28-210ENST00000597618 TRAV1-1A0A0B4J248 108 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 LINC00959A0A1B0GUT2 108 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 F2Z2F3 143 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 APOMO95445 188 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 APCSP02743 223 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 RPL13AP40429 203 aaKnown RBP6.11□□□□□ -1.43
TRIM28-210ENST00000597618 UBE2D1P51668 147 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 EIF5AP63241 154 aaKnown RBP6.11□□□□□ -1.43
TRIM28-210ENST00000597618 Q6ZNX1 250 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 OR2D3Q8NGH3 330 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 TMEM101Q96IK0 257 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 BTF3L4Q96K17 158 aa6.11□□□□□ -1.43
TRIM28-210ENST00000597618 IGLV4-69A0A075B6H9 119 aa6.1□□□□□ -1.43
TRIM28-210ENST00000597618 XKRY2A2RUG3 117 aa6.1□□□□□ -1.43
TRIM28-210ENST00000597618 BCL2P10415 239 aa6.1□□□□□ -1.43
TRIM28-210ENST00000597618 DEFA1P59665 94 aa6.1□□□□□ -1.43
TRIM28-210ENST00000597618 CD164L2Q6UWJ8 174 aa6.1□□□□□ -1.43
TRIM28-210ENST00000597618 PHF5AQ7RTV0 110 aaKnown RBP6.1□□□□□ -1.43
TRIM28-210ENST00000597618 TSKUQ8WUA8 353 aa6.1□□□□□ -1.43
TRIM28-210ENST00000597618 KRTAP1-4P0C5Y4 121 aa6.09□□□□□ -1.43
TRIM28-210ENST00000597618 RPL35P42766 123 aaKnown RBP6.09□□□□□ -1.43
TRIM28-210ENST00000597618 RPL18AQ02543 176 aaKnown RBP6.09□□□□□ -1.43
TRIM28-210ENST00000597618 SS18Q15532 418 aa6.09□□□□□ -1.43
TRIM28-210ENST00000597618 EIF5AL1Q6IS14 154 aaKnown RBP6.09□□□□□ -1.43
TRIM28-210ENST00000597618 TMUB2Q71RG4 321 aa6.09□□□□□ -1.43
TRIM28-210ENST00000597618 NUP35Q8NFH5 326 aa6.09□□□□□ -1.43
TRIM28-210ENST00000597618 CAMK2N2Q96S95 79 aa6.09□□□□□ -1.43
TRIM28-210ENST00000597618 A0A087WZ39 114 aa6.08□□□□□ -1.44
TRIM28-210ENST00000597618 FXYD6-FXYD2A0A087WZ82 144 aa6.08□□□□□ -1.44
TRIM28-210ENST00000597618 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.08□□□□□ -1.44
TRIM28-210ENST00000597618 MALP21145 153 aa6.08□□□□□ -1.44
TRIM28-210ENST00000597618 MEF2BQ02080 365 aaPredicted RBP6.08□□□□□ -1.44
TRIM28-210ENST00000597618 Q5BKY6 102 aa6.08□□□□□ -1.44
TRIM28-210ENST00000597618 LYZL1Q6UWQ5 148 aa6.08□□□□□ -1.44
TRIM28-210ENST00000597618 GATD1Q8NB37 220 aa6.08□□□□□ -1.44
TRIM28-210ENST00000597618 ALG5Q9Y673 324 aa6.08□□□□□ -1.44
TRIM28-210ENST00000597618 COX7A2LO14548 114 aa6.07□□□□□ -1.44
TRIM28-210ENST00000597618 IFNA1P01562 189 aa6.07□□□□□ -1.44
TRIM28-210ENST00000597618 SFT2D1Q8WV19 159 aa6.07□□□□□ -1.44
TRIM28-210ENST00000597618 C19orf71A6NCJ1 209 aa6.06□□□□□ -1.44
TRIM28-210ENST00000597618 SDHAF1A6NFY7 115 aa6.06□□□□□ -1.44
TRIM28-210ENST00000597618 GIPP09681 153 aaPredicted RBP6.06□□□□□ -1.44
TRIM28-210ENST00000597618 CTRLP40313 264 aa6.06□□□□□ -1.44
TRIM28-210ENST00000597618 TWIST1Q15672 202 aa6.06□□□□□ -1.44
TRIM28-210ENST00000597618 CENPWQ5EE01 88 aa6.06□□□□□ -1.44
TRIM28-210ENST00000597618 RPL39LQ96EH5 51 aaKnown RBP6.06□□□□□ -1.44
TRIM28-210ENST00000597618 C2orf48Q96LS8 159 aa6.06□□□□□ -1.44
TRIM28-210ENST00000597618 FSIP2Q5CZC0 6907 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms