RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PRRC2AP48634 2157 aaKnown RBP11.37□□□□□ -0.59
UPF1-204ENST00000596842 H3BMM0 161 aa11.36□□□□□ -0.59
UPF1-204ENST00000596842 SMCPP49901 116 aaPredicted RBP11.36□□□□□ -0.59
UPF1-204ENST00000596842 UBE2WQ96B02 151 aa11.36□□□□□ -0.59
UPF1-204ENST00000596842 PRO0461Q9UI25 63 aa11.36□□□□□ -0.59
UPF1-204ENST00000596842 A4D1N5 150 aa11.36□□□□□ -0.59
UPF1-204ENST00000596842 IGIPA6NJ69 53 aa11.36□□□□□ -0.59
UPF1-204ENST00000596842 PROK1P58294 105 aa11.36□□□□□ -0.59
UPF1-204ENST00000596842 LINC00315P59091 139 aa11.36□□□□□ -0.59
UPF1-204ENST00000596842 CRIP2P52943 208 aaPredicted RBP11.36□□□□□ -0.59
UPF1-204ENST00000596842 PRO1854Q9UHT4 67 aa11.36□□□□□ -0.59
UPF1-204ENST00000596842 CFC1BP0CG36 223 aa11.35□□□□□ -0.59
UPF1-204ENST00000596842 CFC1P0CG37 223 aa11.35□□□□□ -0.59
UPF1-204ENST00000596842 POLR2KP53803 58 aaKnown RBP11.35□□□□□ -0.59
UPF1-204ENST00000596842 COX6B1P14854 86 aa11.35□□□□□ -0.59
UPF1-204ENST00000596842 DEFB136Q30KP8 78 aa11.35□□□□□ -0.59
UPF1-204ENST00000596842 KIF25-AS1Q9Y6Z4 181 aa11.35□□□□□ -0.59
UPF1-204ENST00000596842 DOPEY1Q5JWR5 2465 aa11.34□□□□□ -0.59
UPF1-204ENST00000596842 PAPPA-AS1Q5QFB9 102 aa11.34□□□□□ -0.59
UPF1-204ENST00000596842 TMEM101Q96IK0 257 aa11.34□□□□□ -0.59
UPF1-204ENST00000596842 IGHV3-38A0A0C4DH36 116 aa11.33□□□□□ -0.6
UPF1-204ENST00000596842 MSMBP08118 114 aa11.33□□□□□ -0.6
UPF1-204ENST00000596842 DCANP1Q8TF63 244 aa11.33□□□□□ -0.6
UPF1-204ENST00000596842 A8MZ25 164 aa11.33□□□□□ -0.6
UPF1-204ENST00000596842 PKIGQ9Y2B9 76 aa11.33□□□□□ -0.6
UPF1-204ENST00000596842 A6NDX4 124 aa11.33□□□□□ -0.6
UPF1-204ENST00000596842 KLLNB2CW77 178 aa11.33□□□□□ -0.6
UPF1-204ENST00000596842 CD28P10747 220 aa11.33□□□□□ -0.6
UPF1-204ENST00000596842 IGHV3OR16-12A0A075B7B8 117 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 UBE2D1P51668 147 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 C19orf54Q5BKX5 351 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 IGHV1OR15-1A0A075B7D0 117 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 IGHV3-16A0A0C4DH30 117 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 MUSTN1Q8IVN3 82 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 CSDC2Q9Y534 153 aaKnown RBP11.32□□□□□ -0.6
UPF1-204ENST00000596842 HERVK_113P63121 156 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 DEFB112Q30KQ8 113 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 FBN2P35556 2912 aa11.32□□□□□ -0.6
UPF1-204ENST00000596842 IGHV3-30P01768 117 aa11.31□□□□□ -0.6
UPF1-204ENST00000596842 NHLRC4P0CG21 123 aaPredicted RBP11.31□□□□□ -0.6
UPF1-204ENST00000596842 IGHV3-30-5P0DP03 117 aa11.31□□□□□ -0.6
UPF1-204ENST00000596842 TMEM141Q96I45 108 aa11.31□□□□□ -0.6
UPF1-204ENST00000596842 Q9UF83 564 aa11.31□□□□□ -0.6
UPF1-204ENST00000596842 MXRA5Q9NR99 2828 aa11.31□□□□□ -0.6
UPF1-204ENST00000596842 ATXN8Q156A1 80 aa11.31□□□□□ -0.6
UPF1-204ENST00000596842 TRAV13-1A0A0B4J241 112 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 SMIM9A6NGZ8 99 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 M0QY20 66 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 ATP6V0E2Q8NHE4 81 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 FAM19A5Q7Z5A7 132 aaPredicted RBP11.3□□□□□ -0.6
UPF1-204ENST00000596842 C10orf105Q8TEF2 133 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 CHD6Q8TD26 2715 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 SLC25A29Q8N8R3 303 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 FAM19A4Q96LR4 140 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 ZNF462Q96JM2 2506 aa11.3□□□□□ -0.6
UPF1-204ENST00000596842 MTORP42345 2549 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 IGHV4OR15-8A0A075B7B6 117 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 A0A087WW49 117 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 MED14OSP0DP75 135 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 HRCT1Q6UXD1 115 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 TEX15Q9BXT5 2789 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 DEFB131AP59861 70 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 DAND5Q8N907 189 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 TIMM17AQ99595 171 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 A0A0J9YX75 114 aa11.29□□□□□ -0.6
UPF1-204ENST00000596842 FN1P02751 2386 aaKnown RBP11.28□□□□□ -0.6
UPF1-204ENST00000596842 J3KT08 172 aa11.28□□□□□ -0.6
UPF1-204ENST00000596842 ZNF625Q96I27 306 aaPredicted RBP11.28□□□□□ -0.6
UPF1-204ENST00000596842 TMEM126AQ9H061 195 aa11.28□□□□□ -0.6
UPF1-204ENST00000596842 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.28□□□□□ -0.6
UPF1-204ENST00000596842 TRBV27A0A0K0K1C4 114 aa11.28□□□□□ -0.6
UPF1-204ENST00000596842 IGKV2-29A2NJV5 120 aaPredicted RBP11.28□□□□□ -0.6
UPF1-204ENST00000596842 Q6ZSV7 163 aa11.28□□□□□ -0.6
UPF1-204ENST00000596842 C11orf44Q8N8P7 122 aa11.28□□□□□ -0.6
UPF1-204ENST00000596842 I3L3M4 83 aa11.27□□□□□ -0.6
UPF1-204ENST00000596842 ZNF22P17026 224 aaPredicted RBP11.27□□□□□ -0.61
UPF1-204ENST00000596842 KLK9Q2XQG4 91 aa11.27□□□□□ -0.61
UPF1-204ENST00000596842 NF1P21359 2839 aa11.27□□□□□ -0.61
UPF1-204ENST00000596842 F5H768 121 aa11.27□□□□□ -0.61
UPF1-204ENST00000596842 IGLV1-40P01703 118 aa11.27□□□□□ -0.61
UPF1-204ENST00000596842 NSUN5P1Q3KNT7 163 aa11.27□□□□□ -0.61
UPF1-204ENST00000596842 C20orf203Q8NBC4 194 aa11.27□□□□□ -0.61
UPF1-204ENST00000596842 hADV29S1A0JD25 119 aa11.26□□□□□ -0.61
UPF1-204ENST00000596842 LINC01620Q4KN68 170 aa11.26□□□□□ -0.61
UPF1-204ENST00000596842 TIMM21Q9BVV7 248 aa11.26□□□□□ -0.61
UPF1-204ENST00000596842 LGALS9O00182 355 aa11.26□□□□□ -0.61
UPF1-204ENST00000596842 UBE2D3P61077 147 aa11.26□□□□□ -0.61
UPF1-204ENST00000596842 UBE2D2P62837 147 aa11.26□□□□□ -0.61
UPF1-204ENST00000596842 C18orf65Q6ZTR6 163 aa11.26□□□□□ -0.61
UPF1-204ENST00000596842 CLEC2BQ92478 149 aa11.26□□□□□ -0.61
UPF1-204ENST00000596842 LINC01619G3V211 115 aa11.25□□□□□ -0.61
UPF1-204ENST00000596842 HOXD3P31249 432 aaPredicted RBP11.25□□□□□ -0.61
UPF1-204ENST00000596842 IGLV4-3A0A075B6K6 122 aa11.25□□□□□ -0.61
UPF1-204ENST00000596842 RNASE1P07998 156 aaKnown RBP11.25□□□□□ -0.61
UPF1-204ENST00000596842 SLURP1P55000 103 aa11.25□□□□□ -0.61
UPF1-204ENST00000596842 HIST1H4AP62805 103 aaKnown RBP11.25□□□□□ -0.61
UPF1-204ENST00000596842 B4DSR2 109 aa11.25□□□□□ -0.61
UPF1-204ENST00000596842 H3BUA1 57 aa11.25□□□□□ -0.61
UPF1-204ENST00000596842 ELANEP08246 267 aa11.25□□□□□ -0.61
UPF1-204ENST00000596842 IGSF10Q6WRI0 2623 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms