RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 FAM231BA6NCW3 169 aa9.95□□□□□ -0.82
TRIM28-205ENST00000595028 HIGD1CA8MV81 97 aa9.95□□□□□ -0.82
TRIM28-205ENST00000595028 C9JQL5 133 aa9.95□□□□□ -0.82
TRIM28-205ENST00000595028 MIAQ16674 131 aa9.95□□□□□ -0.82
TRIM28-205ENST00000595028 ISOC2Q96AB3 205 aa9.95□□□□□ -0.82
TRIM28-205ENST00000595028 TMEM243Q9BU79 118 aa9.95□□□□□ -0.82
TRIM28-205ENST00000595028 A0A1B0GUT8 65 aa9.94□□□□□ -0.82
TRIM28-205ENST00000595028 SRSF3P84103 164 aaKnown RBP9.94□□□□□ -0.82
TRIM28-205ENST00000595028 COTL1Q14019 142 aa9.94□□□□□ -0.82
TRIM28-205ENST00000595028 RPL39LQ96EH5 51 aaKnown RBP9.94□□□□□ -0.82
TRIM28-205ENST00000595028 TMEM70Q9BUB7 260 aa9.94□□□□□ -0.82
TRIM28-205ENST00000595028 PRR34Q9NV39 138 aa9.94□□□□□ -0.82
TRIM28-205ENST00000595028 V9GYV3 84 aa9.94□□□□□ -0.82
TRIM28-205ENST00000595028 HMCN2Q8NDA2 5059 aa9.94□□□□□ -0.82
TRIM28-205ENST00000595028 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-205ENST00000595028 RPL23P62829 140 aaKnown RBP9.93□□□□□ -0.82
TRIM28-205ENST00000595028 IFITM2Q01629 132 aa9.93□□□□□ -0.82
TRIM28-205ENST00000595028 TMEM241Q24JQ0 296 aa9.93□□□□□ -0.82
TRIM28-205ENST00000595028 CLPSL2Q6UWE3 100 aa9.93□□□□□ -0.82
TRIM28-205ENST00000595028 LINC00269Q8N2A0 174 aa9.93□□□□□ -0.82
TRIM28-205ENST00000595028 NAT8Q9UHE5 227 aa9.93□□□□□ -0.82
TRIM28-205ENST00000595028 AMTP48728 403 aa9.92□□□□□ -0.82
TRIM28-205ENST00000595028 PEA15Q15121 130 aa9.92□□□□□ -0.82
TRIM28-205ENST00000595028 ADIRFQ15847 76 aa9.92□□□□□ -0.82
TRIM28-205ENST00000595028 DEFB104AQ8WTQ1 72 aa9.92□□□□□ -0.82
TRIM28-205ENST00000595028 SMDT1Q9H4I9 107 aa9.92□□□□□ -0.82
TRIM28-205ENST00000595028 HLA-DQA1P01909 254 aa9.91□□□□□ -0.82
TRIM28-205ENST00000595028 C20orf203Q8NBC4 194 aa9.91□□□□□ -0.82
TRIM28-205ENST00000595028 TMEM191AQ9H0A3 160 aa9.91□□□□□ -0.82
TRIM28-205ENST00000595028 A0A1B0GUV1 79 aa9.9□□□□□ -0.82
TRIM28-205ENST00000595028 SDHAF1A6NFY7 115 aa9.9□□□□□ -0.82
TRIM28-205ENST00000595028 UBE2L6O14933 153 aa9.9□□□□□ -0.82
TRIM28-205ENST00000595028 REG3AQ06141 175 aa9.9□□□□□ -0.82
TRIM28-205ENST00000595028 NUP35Q8NFH5 326 aa9.9□□□□□ -0.82
TRIM28-205ENST00000595028 IGLV4-60A0A075B6I1 120 aa9.89□□□□□ -0.83
TRIM28-205ENST00000595028 TRBV6-5A0A0K0K1A5 114 aa9.89□□□□□ -0.83
TRIM28-205ENST00000595028 NCR2O95944 276 aa9.89□□□□□ -0.83
TRIM28-205ENST00000595028 HAMPP81172 84 aa9.89□□□□□ -0.83
TRIM28-205ENST00000595028 C14orf177Q52M58 125 aa9.89□□□□□ -0.83
TRIM28-205ENST00000595028 KRTAP26-1Q6PEX3 210 aa9.89□□□□□ -0.83
TRIM28-205ENST00000595028 USP17L23D6RBM5 183 aa9.88□□□□□ -0.83
TRIM28-205ENST00000595028 APCSP02743 223 aa9.88□□□□□ -0.83
TRIM28-205ENST00000595028 RIGQ13278 110 aa9.88□□□□□ -0.83
TRIM28-205ENST00000595028 CLLU1Q5K131 121 aa9.88□□□□□ -0.83
TRIM28-205ENST00000595028 RNF185Q96GF1 192 aa9.88□□□□□ -0.83
TRIM28-205ENST00000595028 FAM30AQ9NZY2 134 aa9.88□□□□□ -0.83
TRIM28-205ENST00000595028 NAT8BQ9UHF3 227 aa9.88□□□□□ -0.83
TRIM28-205ENST00000595028 GAS8-AS1O95177 125 aa9.87□□□□□ -0.83
TRIM28-205ENST00000595028 Q5VSD8 79 aa9.87□□□□□ -0.83
TRIM28-205ENST00000595028 Q6ZSA8 131 aa9.87□□□□□ -0.83
TRIM28-205ENST00000595028 AMN1Q8IY45 258 aa9.87□□□□□ -0.83
TRIM28-205ENST00000595028 MRAP2Q96G30 205 aa9.87□□□□□ -0.83
TRIM28-205ENST00000595028 IGLV10-54A0A075B6I4 117 aa9.86□□□□□ -0.83
TRIM28-205ENST00000595028 TRAV8-4A0A0B4J246 113 aa9.86□□□□□ -0.83
TRIM28-205ENST00000595028 SMIM27A0A1W2PRY6 76 aa9.86□□□□□ -0.83
TRIM28-205ENST00000595028 I3L3M4 83 aa9.86□□□□□ -0.83
TRIM28-205ENST00000595028 RAB4AP20338 218 aa9.86□□□□□ -0.83
TRIM28-205ENST00000595028 RPS10P46783 165 aaKnown RBP9.86□□□□□ -0.83
TRIM28-205ENST00000595028 LINC01620Q4KN68 170 aa9.86□□□□□ -0.83
TRIM28-205ENST00000595028 ST20Q9HBF5 79 aa9.86□□□□□ -0.83
TRIM28-205ENST00000595028 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-205ENST00000595028 IGKV2-29A2NJV5 120 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-205ENST00000595028 H7C423 109 aa9.84□□□□□ -0.83
TRIM28-205ENST00000595028 PMCHP20382 165 aa9.84□□□□□ -0.83
TRIM28-205ENST00000595028 AMMECR1LQ6DCA0 310 aa9.84□□□□□ -0.83
TRIM28-205ENST00000595028 TMEM242Q9NWH2 141 aa9.84□□□□□ -0.83
TRIM28-205ENST00000595028 SMKR1H3BMG3 65 aa9.83□□□□□ -0.84
TRIM28-205ENST00000595028 TSHBP01222 138 aa9.83□□□□□ -0.84
TRIM28-205ENST00000595028 SMR3BP02814 79 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-205ENST00000595028 PRSS1P07477 247 aa9.83□□□□□ -0.84
TRIM28-205ENST00000595028 TRBV27A0A0K0K1C4 114 aa9.82□□□□□ -0.84
TRIM28-205ENST00000595028 A0A1B0GW15 77 aa9.82□□□□□ -0.84
TRIM28-205ENST00000595028 FGF6P10767 208 aa9.82□□□□□ -0.84
TRIM28-205ENST00000595028 POLR2KP53803 58 aaKnown RBP9.82□□□□□ -0.84
TRIM28-205ENST00000595028 RNASEKQ6P5S7 137 aaKnown RBP9.82□□□□□ -0.84
TRIM28-205ENST00000595028 NRACQ8N912 160 aa9.82□□□□□ -0.84
TRIM28-205ENST00000595028 J3QL48 77 aa9.81□□□□□ -0.84
TRIM28-205ENST00000595028 ESDP10768 282 aa9.81□□□□□ -0.84
TRIM28-205ENST00000595028 ZNF25P17030 456 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-205ENST00000595028 CAMPP49913 170 aa9.81□□□□□ -0.84
TRIM28-205ENST00000595028 FAM104BQ5XKR9 115 aa9.81□□□□□ -0.84
TRIM28-205ENST00000595028 IGKV3OR2-268A0A0C4DH90 116 aa9.8□□□□□ -0.84
TRIM28-205ENST00000595028 PPP1R17O96001 155 aa9.8□□□□□ -0.84
TRIM28-205ENST00000595028 MRPL51Q4U2R6 128 aaKnown RBP9.8□□□□□ -0.84
TRIM28-205ENST00000595028 A0A1B0GXF2 115 aa9.79□□□□□ -0.84
TRIM28-205ENST00000595028 C7orf77A4D0Y5 90 aa9.79□□□□□ -0.84
TRIM28-205ENST00000595028 SUMO2P61956 95 aaKnown RBP9.79□□□□□ -0.84
TRIM28-205ENST00000595028 HBBP68871 147 aa9.79□□□□□ -0.84
TRIM28-205ENST00000595028 MRPL54Q6P161 138 aaKnown RBP9.79□□□□□ -0.84
TRIM28-205ENST00000595028 SCXQ7RTU7 201 aa9.79□□□□□ -0.84
TRIM28-205ENST00000595028 COMMD7Q86VX2 200 aa9.79□□□□□ -0.84
TRIM28-205ENST00000595028 CLRN3Q8NCR9 226 aa9.79□□□□□ -0.84
TRIM28-205ENST00000595028 FAM229AH3BQW9 127 aa9.78□□□□□ -0.84
TRIM28-205ENST00000595028 S100A8P05109 93 aa9.78□□□□□ -0.84
TRIM28-205ENST00000595028 DGAT2L7PQ6IED9 249 aa9.78□□□□□ -0.84
TRIM28-205ENST00000595028 BTF3L4Q96K17 158 aa9.78□□□□□ -0.84
TRIM28-205ENST00000595028 hDV102S1A0JD36 115 aa9.77□□□□□ -0.85
TRIM28-205ENST00000595028 LINC00862A6NCI5 91 aa9.77□□□□□ -0.85
TRIM28-205ENST00000595028 GAGE12HA6NDE8 117 aa9.77□□□□□ -0.85
TRIM28-205ENST00000595028 VCYO14598 125 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms