RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 USP17L23D6RBM5 183 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 M0QY20 66 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 NPYP01303 97 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 P0DMU3 169 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 FAM231AP0DMU4 169 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 FAM231CP0DMU5 169 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 RPL36AP83881 106 aaKnown RBP3.72□□□□□ -1.81
LIG3-210ENST00000588109 GAGE1Q13065 139 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 GAGE4Q13068 117 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 GAGE5Q13069 117 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 SERTAD4-AS1Q5TG53 156 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 PRSS3P2Q8NHM4 247 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 RPL36ALQ969Q0 106 aaKnown RBP3.72□□□□□ -1.81
LIG3-210ENST00000588109 DNAJC30Q96LL9 226 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 MAP1LC3AQ9H492 121 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 ST20Q9HBF5 79 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 NIT2Q9NQR4 276 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 LAMTOR2Q9Y2Q5 125 aa3.72□□□□□ -1.81
LIG3-210ENST00000588109 TENM3Q9P273 2699 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 NACAE9PAV3 2078 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 TRBV7-3A0A075B6L6 115 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 LOC100131303A0A0U1RQF7 123 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 LOC389332A0A1B0GUA5 103 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 GAS8-AS1O95177 125 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 RAB5BP61020 215 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 LBHQ53QV2 105 aaPredicted RBP3.71□□□□□ -1.82
LIG3-210ENST00000588109 NRACQ8N912 160 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 ZNRF2Q8NHG8 242 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 PHLDA1Q8WV24 401 aaPredicted RBP3.71□□□□□ -1.82
LIG3-210ENST00000588109 ALKBH7Q9BT30 221 aaPredicted RBP3.71□□□□□ -1.82
LIG3-210ENST00000588109 ICOSQ9Y6W8 199 aa3.71□□□□□ -1.82
LIG3-210ENST00000588109 A0A096LPF7 62 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 IGHV3-38A0A0C4DH36 116 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 TRBV6-5A0A0K0K1A5 114 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 NUPR2A6NF83 97 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 SDHAF1A6NFY7 115 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 IGLL5B9A064 214 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 VCYO14598 125 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 PHOX2AO14813 284 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 PMCHP20382 165 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 FCER1GP30273 86 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 COTL1Q14019 142 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 MRPL23Q16540 153 aaKnown RBP3.7□□□□□ -1.82
LIG3-210ENST00000588109 IQCJQ1A5X6 159 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 FA2HQ7L5A8 372 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 NEGR1Q7Z3B1 354 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 DAZ4Q86SG3 579 aaKnown RBP3.7□□□□□ -1.82
LIG3-210ENST00000588109 BAGE3Q86Y29 109 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 NEXN-AS1Q8NBZ9 246 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 VSIG2Q96IQ7 327 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 KIR2DL4Q99706 377 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 C20orf78Q9BR46 151 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 DAZ3Q9NR90 486 aaKnown RBP3.7□□□□□ -1.82
LIG3-210ENST00000588109 Q9UF83 564 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 KLK5Q9Y337 293 aaPredicted RBP3.7□□□□□ -1.82
LIG3-210ENST00000588109 FBN3Q75N90 2809 aa3.7□□□□□ -1.82
LIG3-210ENST00000588109 H3BNG1 76 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 I3L3M4 83 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BKO60814 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BJP06899 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BOP23527 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BBP33778 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 IFI27P40305 119 aaPredicted RBP3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BDP58876 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 UBE2D3P61077 147 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BCP62807 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 UBE2D2P62837 147 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST2H2BEQ16778 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.69□□□□□ -1.82
LIG3-210ENST00000588109 ZFAND6Q6FIF0 208 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 RNASEKQ6P5S7 137 aaKnown RBP3.69□□□□□ -1.82
LIG3-210ENST00000588109 CEMP1Q6PRD7 247 aaPredicted RBP3.69□□□□□ -1.82
LIG3-210ENST00000588109 SH2D6Q7Z4S9 175 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 C15orf53Q8NAA6 179 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 ATP6V0E2Q8NHE4 81 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 C18orf32Q8TCD1 76 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 DEFB104AQ8WTQ1 72 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BHQ93079 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BNQ99877 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 HIST1H2BMQ99879 126 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 TMEM70Q9BUB7 260 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 SMIM2Q9BVW6 85 aa3.69□□□□□ -1.82
LIG3-210ENST00000588109 NXT2Q9NPJ8 142 aaKnown RBP3.69□□□□□ -1.82
LIG3-210ENST00000588109 TRBV27A0A0K0K1C4 114 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 TCAPO15273 167 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 LINC00614P0C842 121 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 VPREB1P12018 145 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 AMTP48728 403 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 POLR2KP53803 58 aaKnown RBP3.68□□□□□ -1.82
LIG3-210ENST00000588109 NDUFA6P56556 154 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 Q0VG73 95 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 TMEM97Q5BJF2 176 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 NIT1Q86X76 327 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 Q8N8P6 123 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 MUC7Q8TAX7 377 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 COL7A1Q02388 2944 aa3.68□□□□□ -1.82
LIG3-210ENST00000588109 TRBV25-1A0A075B6N4 114 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 IGHV1-24A0A0C4DH33 117 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 K7EMI3 77 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 UBE2L6O14933 153 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms