RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 TRAV1-1A0A0B4J248 108 aa7.51□□□□□ -1.21
LIG3-209ENST00000586435 UBE2L6O14933 153 aa7.51□□□□□ -1.21
LIG3-209ENST00000586435 CHTF8P0CG12 524 aa7.51□□□□□ -1.21
LIG3-209ENST00000586435 CCL20P78556 96 aa7.51□□□□□ -1.21
LIG3-209ENST00000586435 COTL1Q14019 142 aa7.51□□□□□ -1.21
LIG3-209ENST00000586435 C15orf56Q8N910 161 aa7.51□□□□□ -1.21
LIG3-209ENST00000586435 AMTP48728 403 aa7.5□□□□□ -1.21
LIG3-209ENST00000586435 SULT1A2P50226 295 aa7.5□□□□□ -1.21
LIG3-209ENST00000586435 CFAP161Q6P656 301 aa7.5□□□□□ -1.21
LIG3-209ENST00000586435 DPH3Q96FX2 82 aa7.5□□□□□ -1.21
LIG3-209ENST00000586435 CNFNQ9BYD5 112 aa7.5□□□□□ -1.21
LIG3-209ENST00000586435 GNG13Q9P2W3 67 aa7.5□□□□□ -1.21
LIG3-209ENST00000586435 PHOX2AO14813 284 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 NTF3P20783 257 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 CTRLP40313 264 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 GNG4P50150 75 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 RAB5CP51148 216 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 LYZL1Q6UWQ5 148 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 C9orf62Q8N4C0 152 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 C7orf33Q8WU49 177 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 BIN3Q9NQY0 253 aa7.49□□□□□ -1.21
LIG3-209ENST00000586435 TNXBP22105 4242 aa7.48□□□□□ -1.21
LIG3-209ENST00000586435 GAGE12HA6NDE8 117 aa7.48□□□□□ -1.21
LIG3-209ENST00000586435 PDE6DO43924 150 aa7.48□□□□□ -1.21
LIG3-209ENST00000586435 NDUFS6O75380 124 aaKnown RBP7.48□□□□□ -1.21
LIG3-209ENST00000586435 IFNA1P01562 189 aa7.48□□□□□ -1.21
LIG3-209ENST00000586435 RPS10P46783 165 aaKnown RBP7.48□□□□□ -1.21
LIG3-209ENST00000586435 MEF2BQ02080 365 aaPredicted RBP7.48□□□□□ -1.21
LIG3-209ENST00000586435 TRBV20OR9-2A0A075B6H5 130 aa7.47□□□□□ -1.21
LIG3-209ENST00000586435 RAB19A4D1S5 217 aa7.47□□□□□ -1.21
LIG3-209ENST00000586435 TEX46H3BTG2 121 aa7.47□□□□□ -1.21
LIG3-209ENST00000586435 H7C423 109 aa7.47□□□□□ -1.21
LIG3-209ENST00000586435 NCR2O95944 276 aa7.47□□□□□ -1.21
LIG3-209ENST00000586435 COX6A2Q02221 97 aa7.47□□□□□ -1.21
LIG3-209ENST00000586435 GVQW2A0A096LPI5 108 aaPredicted RBP7.46□□□□□ -1.22
LIG3-209ENST00000586435 PRR3P79522 188 aaKnown RBP7.46□□□□□ -1.22
LIG3-209ENST00000586435 GATD1Q8NB37 220 aa7.46□□□□□ -1.22
LIG3-209ENST00000586435 CHCHD10Q8WYQ3 142 aaPredicted RBP7.46□□□□□ -1.22
LIG3-209ENST00000586435 LINC01600Q96MT4 127 aa7.46□□□□□ -1.22
LIG3-209ENST00000586435 MAJINQ3KP22 176 aa7.45□□□□□ -1.22
LIG3-209ENST00000586435 HIGD2BQ4VC39 106 aa7.45□□□□□ -1.22
LIG3-209ENST00000586435 EIF5AL1Q6IS14 154 aaKnown RBP7.45□□□□□ -1.22
LIG3-209ENST00000586435 Q6ZNX1 250 aa7.45□□□□□ -1.22
LIG3-209ENST00000586435 NUDT10Q8NFP7 164 aa7.45□□□□□ -1.22
LIG3-209ENST00000586435 PRSS3P2Q8NHM4 247 aa7.45□□□□□ -1.22
LIG3-209ENST00000586435 NUDT11Q96G61 164 aa7.45□□□□□ -1.22
LIG3-209ENST00000586435 MED9Q9NWA0 146 aa7.45□□□□□ -1.22
LIG3-209ENST00000586435 IGKV2-24A0A0C4DH68 120 aa7.44□□□□□ -1.22
LIG3-209ENST00000586435 IGKV3OR2-268A0A0C4DH90 116 aa7.44□□□□□ -1.22
LIG3-209ENST00000586435 APCSP02743 223 aa7.44□□□□□ -1.22
LIG3-209ENST00000586435 BCL2P10415 239 aa7.44□□□□□ -1.22
LIG3-209ENST00000586435 TWIST1Q15672 202 aa7.44□□□□□ -1.22
LIG3-209ENST00000586435 AMMECR1LQ6DCA0 310 aa7.44□□□□□ -1.22
LIG3-209ENST00000586435 STPG4Q8N801 248 aa7.44□□□□□ -1.22
LIG3-209ENST00000586435 PKIGQ9Y2B9 76 aa7.44□□□□□ -1.22
LIG3-209ENST00000586435 LRP2P98164 4655 aa7.43□□□□□ -1.22
LIG3-209ENST00000586435 TRAV26-2A0A0B4J265 109 aa7.43□□□□□ -1.22
LIG3-209ENST00000586435 FGF6P10767 208 aa7.43□□□□□ -1.22
LIG3-209ENST00000586435 ZNF25P17030 456 aaPredicted RBP7.43□□□□□ -1.22
LIG3-209ENST00000586435 FOXI1Q12951 378 aa7.43□□□□□ -1.22
LIG3-209ENST00000586435 TEX261Q6UWH6 196 aa7.43□□□□□ -1.22
LIG3-209ENST00000586435 GTSF1Q8WW33 167 aa7.43□□□□□ -1.22
LIG3-209ENST00000586435 RPP21Q9H633 154 aaKnown RBP7.43□□□□□ -1.22
LIG3-209ENST00000586435 LINC00474Q9P2X8 69 aa7.43□□□□□ -1.22
LIG3-209ENST00000586435 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.42□□□□□ -1.22
LIG3-209ENST00000586435 A0A096LNI7 61 aa7.42□□□□□ -1.22
LIG3-209ENST00000586435 IGKV2-29A2NJV5 120 aaPredicted RBP7.42□□□□□ -1.22
LIG3-209ENST00000586435 TAGLN2P37802 199 aaKnown RBP7.42□□□□□ -1.22
LIG3-209ENST00000586435 RNASEKQ6P5S7 137 aaKnown RBP7.42□□□□□ -1.22
LIG3-209ENST00000586435 OR5A1Q8NGJ0 315 aa7.42□□□□□ -1.22
LIG3-209ENST00000586435 RPL39LQ96EH5 51 aaKnown RBP7.42□□□□□ -1.22
LIG3-209ENST00000586435 A0A0J9YXV3 536 aa7.41□□□□□ -1.22
LIG3-209ENST00000586435 SDHAF1A6NFY7 115 aa7.41□□□□□ -1.22
LIG3-209ENST00000586435 SPINK6Q6UWN8 80 aa7.41□□□□□ -1.22
LIG3-209ENST00000586435 SMIM15Q7Z3B0 74 aa7.41□□□□□ -1.22
LIG3-209ENST00000586435 FAM210AQ96ND0 272 aa7.41□□□□□ -1.22
LIG3-209ENST00000586435 RNASE7Q9H1E1 156 aaKnown RBP7.41□□□□□ -1.22
LIG3-209ENST00000586435 IGHV1-58A0A0C4DH39 117 aa7.4□□□□□ -1.22
LIG3-209ENST00000586435 TRBV6-5A0A0K0K1A5 114 aa7.4□□□□□ -1.22
LIG3-209ENST00000586435 K7EN84 100 aa7.4□□□□□ -1.22
LIG3-209ENST00000586435 LINC00959A0A1B0GUT2 108 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 FAM231BA6NCW3 169 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 I3L3M4 83 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 ESDP10768 282 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 REG3GQ6UW15 175 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 LYPD6BQ8NI32 183 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 OCC1Q8TAD7 63 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 TMEM101Q96IK0 257 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 BTF3L4Q96K17 158 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 CARD19Q96LW7 228 aa7.39□□□□□ -1.23
LIG3-209ENST00000586435 CCL25O15444 150 aa7.38□□□□□ -1.23
LIG3-209ENST00000586435 XCL1P47992 114 aa7.38□□□□□ -1.23
LIG3-209ENST00000586435 FOXA3P55318 350 aaPredicted RBP7.38□□□□□ -1.23
LIG3-209ENST00000586435 KRTAP10-8P60410 259 aa7.38□□□□□ -1.23
LIG3-209ENST00000586435 PMCHP20382 165 aa7.37□□□□□ -1.23
LIG3-209ENST00000586435 SRSF9Q13242 221 aaKnown RBP eCLIP7.37□□□□□ -1.23
LIG3-209ENST00000586435 CT83Q5H943 113 aa7.37□□□□□ -1.23
LIG3-209ENST00000586435 CD164L2Q6UWJ8 174 aa7.37□□□□□ -1.23
LIG3-209ENST00000586435 Q6ZRP5 223 aa7.37□□□□□ -1.23
LIG3-209ENST00000586435 FAM231DQ6ZW35 169 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms