RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 GAS8-AS1O95177 125 aa9.9□□□□□ -0.82
CLIP3-202ENST00000585466 MIAQ16674 131 aa9.9□□□□□ -0.82
CLIP3-202ENST00000585466 LINC01620Q4KN68 170 aa9.9□□□□□ -0.82
CLIP3-202ENST00000585466 CLPSL2Q6UWE3 100 aa9.9□□□□□ -0.82
CLIP3-202ENST00000585466 LINC00269Q8N2A0 174 aa9.9□□□□□ -0.82
CLIP3-202ENST00000585466 TSKUQ8WUA8 353 aa9.9□□□□□ -0.82
CLIP3-202ENST00000585466 A0A1B0GUV1 79 aa9.89□□□□□ -0.83
CLIP3-202ENST00000585466 HIGD1CA8MV81 97 aa9.89□□□□□ -0.83
CLIP3-202ENST00000585466 EPM2AB3EWF7 344 aa9.89□□□□□ -0.83
CLIP3-202ENST00000585466 CRPP02741 224 aa9.89□□□□□ -0.83
CLIP3-202ENST00000585466 Q5VSD8 79 aa9.89□□□□□ -0.83
CLIP3-202ENST00000585466 ISOC2Q96AB3 205 aa9.89□□□□□ -0.83
CLIP3-202ENST00000585466 TMEM243Q9BU79 118 aa9.89□□□□□ -0.83
CLIP3-202ENST00000585466 FAM231BA6NCW3 169 aa9.88□□□□□ -0.83
CLIP3-202ENST00000585466 SMR3BP02814 79 aaPredicted RBP9.88□□□□□ -0.83
CLIP3-202ENST00000585466 RPL23P62829 140 aaKnown RBP9.88□□□□□ -0.83
CLIP3-202ENST00000585466 RNF185Q96GF1 192 aa9.88□□□□□ -0.83
CLIP3-202ENST00000585466 MYCBP2O75592 4640 aa9.87□□□□□ -0.83
CLIP3-202ENST00000585466 TRBV6-5A0A0K0K1A5 114 aa9.86□□□□□ -0.83
CLIP3-202ENST00000585466 A0A1B0GUT8 65 aa9.86□□□□□ -0.83
CLIP3-202ENST00000585466 USP17L23D6RBM5 183 aa9.86□□□□□ -0.83
CLIP3-202ENST00000585466 REG3AQ06141 175 aa9.86□□□□□ -0.83
CLIP3-202ENST00000585466 COTL1Q14019 142 aa9.86□□□□□ -0.83
CLIP3-202ENST00000585466 FAM74A3Q4VXF1 159 aa9.86□□□□□ -0.83
CLIP3-202ENST00000585466 SRRM2Q9UQ35 2752 aaKnown RBP9.86□□□□□ -0.83
CLIP3-202ENST00000585466 FLG2Q5D862 2391 aaPredicted RBP9.86□□□□□ -0.83
CLIP3-202ENST00000585466 SDHAF1A6NFY7 115 aa9.85□□□□□ -0.83
CLIP3-202ENST00000585466 HLA-DQA1P01909 254 aa9.85□□□□□ -0.83
CLIP3-202ENST00000585466 PRSS1P07477 247 aa9.85□□□□□ -0.83
CLIP3-202ENST00000585466 RPS10P46783 165 aaKnown RBP9.85□□□□□ -0.83
CLIP3-202ENST00000585466 AMTP48728 403 aa9.85□□□□□ -0.83
CLIP3-202ENST00000585466 TMEM241Q24JQ0 296 aa9.85□□□□□ -0.83
CLIP3-202ENST00000585466 NUP35Q8NFH5 326 aa9.85□□□□□ -0.83
CLIP3-202ENST00000585466 TMEM191AQ9H0A3 160 aa9.85□□□□□ -0.83
CLIP3-202ENST00000585466 SMIM15Q7Z3B0 74 aa9.84□□□□□ -0.83
CLIP3-202ENST00000585466 NAT8Q9UHE5 227 aa9.84□□□□□ -0.83
CLIP3-202ENST00000585466 IGLV10-54A0A075B6I4 117 aa9.83□□□□□ -0.84
CLIP3-202ENST00000585466 NCR2O95944 276 aa9.83□□□□□ -0.84
CLIP3-202ENST00000585466 RAB4AP20338 218 aa9.83□□□□□ -0.84
CLIP3-202ENST00000585466 TSHBP01222 138 aa9.82□□□□□ -0.84
CLIP3-202ENST00000585466 POLR2KP53803 58 aaKnown RBP9.82□□□□□ -0.84
CLIP3-202ENST00000585466 ADIRFQ15847 76 aa9.82□□□□□ -0.84
CLIP3-202ENST00000585466 C14orf177Q52M58 125 aa9.82□□□□□ -0.84
CLIP3-202ENST00000585466 SCXQ7RTU7 201 aa9.82□□□□□ -0.84
CLIP3-202ENST00000585466 AMN1Q8IY45 258 aa9.82□□□□□ -0.84
CLIP3-202ENST00000585466 SMDT1Q9H4I9 107 aa9.82□□□□□ -0.84
CLIP3-202ENST00000585466 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.81□□□□□ -0.84
CLIP3-202ENST00000585466 SMIM27A0A1W2PRY6 76 aa9.81□□□□□ -0.84
CLIP3-202ENST00000585466 IGKV2-29A2NJV5 120 aaPredicted RBP9.81□□□□□ -0.84
CLIP3-202ENST00000585466 ESDP10768 282 aa9.81□□□□□ -0.84
CLIP3-202ENST00000585466 PEA15Q15121 130 aa9.81□□□□□ -0.84
CLIP3-202ENST00000585466 BORCS7Q96B45 105 aa9.81□□□□□ -0.84
CLIP3-202ENST00000585466 PKHD1L1Q86WI1 4243 aa9.81□□□□□ -0.84
CLIP3-202ENST00000585466 TRAV8-4A0A0B4J246 113 aa9.8□□□□□ -0.84
CLIP3-202ENST00000585466 UBE2L6O14933 153 aa9.8□□□□□ -0.84
CLIP3-202ENST00000585466 INAFM2P0DMQ5 153 aa9.8□□□□□ -0.84
CLIP3-202ENST00000585466 NRACQ8N912 160 aa9.8□□□□□ -0.84
CLIP3-202ENST00000585466 MRAP2Q96G30 205 aa9.8□□□□□ -0.84
CLIP3-202ENST00000585466 TRBV27A0A0K0K1C4 114 aa9.79□□□□□ -0.84
CLIP3-202ENST00000585466 SMKR1H3BMG3 65 aa9.79□□□□□ -0.84
CLIP3-202ENST00000585466 H7C423 109 aa9.79□□□□□ -0.84
CLIP3-202ENST00000585466 I3L3M4 83 aa9.79□□□□□ -0.84
CLIP3-202ENST00000585466 APCSP02743 223 aa9.79□□□□□ -0.84
CLIP3-202ENST00000585466 CHAC1Q9BUX1 264 aa9.79□□□□□ -0.84
CLIP3-202ENST00000585466 NAT8BQ9UHF3 227 aa9.79□□□□□ -0.84
CLIP3-202ENST00000585466 HERC1Q15751 4861 aa9.79□□□□□ -0.84
CLIP3-202ENST00000585466 SLPIP03973 132 aa9.78□□□□□ -0.84
CLIP3-202ENST00000585466 FGF6P10767 208 aa9.78□□□□□ -0.84
CLIP3-202ENST00000585466 KRTAP10-4P60372 401 aaPredicted RBP9.78□□□□□ -0.84
CLIP3-202ENST00000585466 RIGQ13278 110 aa9.78□□□□□ -0.84
CLIP3-202ENST00000585466 C9orf163Q8N9P6 203 aa9.78□□□□□ -0.84
CLIP3-202ENST00000585466 ST20Q9HBF5 79 aa9.78□□□□□ -0.84
CLIP3-202ENST00000585466 TMEM242Q9NWH2 141 aa9.78□□□□□ -0.84
CLIP3-202ENST00000585466 PMCHP20382 165 aa9.77□□□□□ -0.85
CLIP3-202ENST00000585466 DGAT2L7PQ6IED9 249 aa9.77□□□□□ -0.85
CLIP3-202ENST00000585466 LINC00528Q8N1L1 170 aa9.77□□□□□ -0.85
CLIP3-202ENST00000585466 C15orf56Q8N910 161 aa9.77□□□□□ -0.85
CLIP3-202ENST00000585466 CIRBP-AS1Q8TBR5 109 aa9.77□□□□□ -0.85
CLIP3-202ENST00000585466 DMBT1Q9UGM3 2413 aaPredicted RBP9.77□□□□□ -0.85
CLIP3-202ENST00000585466 A0A1B0GXF2 115 aa9.76□□□□□ -0.85
CLIP3-202ENST00000585466 FAM229AH3BQW9 127 aa9.76□□□□□ -0.85
CLIP3-202ENST00000585466 CNBPP62633 177 aaKnown RBP9.76□□□□□ -0.85
CLIP3-202ENST00000585466 MRPL51Q4U2R6 128 aaKnown RBP9.76□□□□□ -0.85
CLIP3-202ENST00000585466 FAM104BQ5XKR9 115 aa9.76□□□□□ -0.85
CLIP3-202ENST00000585466 PANO1I0J062 215 aa9.75□□□□□ -0.85
CLIP3-202ENST00000585466 CLRN3Q8NCR9 226 aa9.75□□□□□ -0.85
CLIP3-202ENST00000585466 GAGE12HA6NDE8 117 aa9.74□□□□□ -0.85
CLIP3-202ENST00000585466 ZNF25P17030 456 aaPredicted RBP9.74□□□□□ -0.85
CLIP3-202ENST00000585466 AMMECR1LQ6DCA0 310 aa9.74□□□□□ -0.85
CLIP3-202ENST00000585466 RNASEKQ6P5S7 137 aaKnown RBP9.74□□□□□ -0.85
CLIP3-202ENST00000585466 SDIM1Q6ZPB5 146 aa9.74□□□□□ -0.85
CLIP3-202ENST00000585466 MRPL52Q86TS9 123 aaKnown RBP9.74□□□□□ -0.85
CLIP3-202ENST00000585466 CHCHD10Q8WYQ3 142 aaPredicted RBP9.74□□□□□ -0.85
CLIP3-202ENST00000585466 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.74□□□□□ -0.85
CLIP3-202ENST00000585466 IGKV3OR2-268A0A0C4DH90 116 aa9.73□□□□□ -0.85
CLIP3-202ENST00000585466 SUMO2P61956 95 aaKnown RBP9.73□□□□□ -0.85
CLIP3-202ENST00000585466 FOXI1Q12951 378 aa9.73□□□□□ -0.85
CLIP3-202ENST00000585466 OR5A1Q8NGJ0 315 aa9.73□□□□□ -0.85
CLIP3-202ENST00000585466 TRBV24-1A0A075B6N3 115 aa9.72□□□□□ -0.85
CLIP3-202ENST00000585466 A0A1B0GW15 77 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms