RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 NUPR2A6NF83 97 aa11.18□□□□□ -0.62
SS18-211ENST00000578954 RNASEKQ6P5S7 137 aaKnown RBP11.18□□□□□ -0.62
SS18-211ENST00000578954 NUPR1O60356 82 aa11.17□□□□□ -0.62
SS18-211ENST00000578954 LAGE3Q14657 143 aa11.17□□□□□ -0.62
SS18-211ENST00000578954 ORMDL2Q53FV1 153 aa11.17□□□□□ -0.62
SS18-211ENST00000578954 NTM-AS1Q6ZSK4 140 aa11.17□□□□□ -0.62
SS18-211ENST00000578954 FCER1GP30273 86 aa11.16□□□□□ -0.62
SS18-211ENST00000578954 WWC2-AS2Q96NR7 200 aa11.16□□□□□ -0.62
SS18-211ENST00000578954 TMA7Q9Y2S6 64 aaKnown RBP11.16□□□□□ -0.62
SS18-211ENST00000578954 A0A096LNJ9 63 aa11.15□□□□□ -0.62
SS18-211ENST00000578954 TRBV6-8A0A0A6YYG3 113 aa11.15□□□□□ -0.62
SS18-211ENST00000578954 IGLL5B9A064 214 aa11.15□□□□□ -0.62
SS18-211ENST00000578954 HSBP1O75506 76 aa11.15□□□□□ -0.62
SS18-211ENST00000578954 NUDT3O95989 172 aa11.15□□□□□ -0.62
SS18-211ENST00000578954 S100A6P06703 90 aa11.15□□□□□ -0.62
SS18-211ENST00000578954 CHCHD7Q9BUK0 85 aa11.15□□□□□ -0.62
SS18-211ENST00000578954 C5orf52A6NGY3 159 aa11.14□□□□□ -0.63
SS18-211ENST00000578954 TCTAP57738 103 aa11.14□□□□□ -0.63
SS18-211ENST00000578954 KLK5Q9Y337 293 aaPredicted RBP11.14□□□□□ -0.63
SS18-211ENST00000578954 IGHV1-24A0A0C4DH33 117 aa11.13□□□□□ -0.63
SS18-211ENST00000578954 AMTP48728 403 aa11.13□□□□□ -0.63
SS18-211ENST00000578954 LYPD5Q6UWN5 251 aa11.13□□□□□ -0.63
SS18-211ENST00000578954 C20orf203Q8NBC4 194 aa11.13□□□□□ -0.63
SS18-211ENST00000578954 MUC7Q8TAX7 377 aa11.13□□□□□ -0.63
SS18-211ENST00000578954 DEFB104AQ8WTQ1 72 aa11.13□□□□□ -0.63
SS18-211ENST00000578954 APLNQ9ULZ1 77 aa11.13□□□□□ -0.63
SS18-211ENST00000578954 TGP01266 2768 aa11.13□□□□□ -0.63
SS18-211ENST00000578954 TRBV25-1A0A075B6N4 114 aa11.12□□□□□ -0.63
SS18-211ENST00000578954 HBDP02042 147 aa11.12□□□□□ -0.63
SS18-211ENST00000578954 G0S2P27469 103 aa11.12□□□□□ -0.63
SS18-211ENST00000578954 LELP1Q5T871 98 aa11.12□□□□□ -0.63
SS18-211ENST00000578954 HIST3H2BBQ8N257 126 aa11.12□□□□□ -0.63
SS18-211ENST00000578954 LINC01549A6NIU2 74 aa11.11□□□□□ -0.63
SS18-211ENST00000578954 H7C423 109 aa11.11□□□□□ -0.63
SS18-211ENST00000578954 SNRPEP62304 92 aaKnown RBP11.11□□□□□ -0.63
SS18-211ENST00000578954 C2orf66Q6UXQ4 117 aa11.11□□□□□ -0.63
SS18-211ENST00000578954 TOMM6Q96B49 74 aa11.11□□□□□ -0.63
SS18-211ENST00000578954 PACRGQ96M98 296 aaPredicted RBP11.11□□□□□ -0.63
SS18-211ENST00000578954 TMEM243Q9BU79 118 aa11.11□□□□□ -0.63
SS18-211ENST00000578954 STARD9Q9P2P6 4700 aa11.11□□□□□ -0.63
SS18-211ENST00000578954 PMCHL1Q16048 86 aa11.1□□□□□ -0.63
SS18-211ENST00000578954 ESRGQ1W209 222 aa11.1□□□□□ -0.63
SS18-211ENST00000578954 PDZD11Q5EBL8 140 aa11.1□□□□□ -0.63
SS18-211ENST00000578954 FAM19A2Q8N3H0 131 aa11.1□□□□□ -0.63
SS18-211ENST00000578954 CYSLTR1Q9Y271 337 aa11.1□□□□□ -0.63
SS18-211ENST00000578954 TMEM18Q96B42 140 aa11.09□□□□□ -0.63
SS18-211ENST00000578954 CSMD3Q7Z407 3707 aa11.08□□□□□ -0.64
SS18-211ENST00000578954 BTF3P20290 206 aaKnown RBP11.08□□□□□ -0.64
SS18-211ENST00000578954 RPL39P62891 51 aaKnown RBP11.08□□□□□ -0.64
SS18-211ENST00000578954 MRPL52Q86TS9 123 aaKnown RBP11.08□□□□□ -0.64
SS18-211ENST00000578954 TIMM21Q9BVV7 248 aa11.08□□□□□ -0.64
SS18-211ENST00000578954 PLECQ15149 4684 aaKnown RBP11.07□□□□□ -0.64
SS18-211ENST00000578954 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.07□□□□□ -0.64
SS18-211ENST00000578954 IGKV2-29A2NJV5 120 aaPredicted RBP11.07□□□□□ -0.64
SS18-211ENST00000578954 UBE2D4Q9Y2X8 147 aa11.07□□□□□ -0.64
SS18-211ENST00000578954 MRPS16Q9Y3D3 137 aaKnown RBP11.07□□□□□ -0.64
SS18-211ENST00000578954 PYGO1Q9Y3Y4 419 aa11.07□□□□□ -0.64
SS18-211ENST00000578954 IGIPA6NJ69 53 aa11.06□□□□□ -0.64
SS18-211ENST00000578954 IFITM10A6NMD0 228 aa11.06□□□□□ -0.64
SS18-211ENST00000578954 NPSP0C0P6 89 aa11.06□□□□□ -0.64
SS18-211ENST00000578954 ZFAND6Q6FIF0 208 aa11.06□□□□□ -0.64
SS18-211ENST00000578954 TIMM17AQ99595 171 aa11.06□□□□□ -0.64
SS18-211ENST00000578954 HIST1H2BLQ99880 126 aa11.06□□□□□ -0.64
SS18-211ENST00000578954 UPK3BQ9BT76 320 aa11.06□□□□□ -0.64
SS18-211ENST00000578954 SPANXA1Q9NS26 97 aa11.06□□□□□ -0.64
SS18-211ENST00000578954 CSDC2Q9Y534 153 aaKnown RBP11.06□□□□□ -0.64
SS18-211ENST00000578954 LEPROTL1O95214 131 aa11.05□□□□□ -0.64
SS18-211ENST00000578954 CCL18P55774 89 aa11.05□□□□□ -0.64
SS18-211ENST00000578954 PKIAP61925 76 aa11.05□□□□□ -0.64
SS18-211ENST00000578954 SMAGPQ0VAQ4 97 aa11.05□□□□□ -0.64
SS18-211ENST00000578954 ERASQ7Z444 233 aa11.05□□□□□ -0.64
SS18-211ENST00000578954 CHCHD5Q9BSY4 110 aa11.05□□□□□ -0.64
SS18-211ENST00000578954 LINC00588Q9Y4M8 146 aa11.05□□□□□ -0.64
SS18-211ENST00000578954 TRAV8-6A0A0B4J262 113 aa11.04□□□□□ -0.64
SS18-211ENST00000578954 A0A1B0GUV1 79 aa11.04□□□□□ -0.64
SS18-211ENST00000578954 C3orf84H3BNL1 204 aa11.04□□□□□ -0.64
SS18-211ENST00000578954 UBE2L6O14933 153 aa11.04□□□□□ -0.64
SS18-211ENST00000578954 FGF6P10767 208 aa11.04□□□□□ -0.64
SS18-211ENST00000578954 ZNF25P17030 456 aaPredicted RBP11.04□□□□□ -0.64
SS18-211ENST00000578954 S100A2P29034 98 aa11.04□□□□□ -0.64
SS18-211ENST00000578954 FAM104AQ969W3 186 aa11.04□□□□□ -0.64
SS18-211ENST00000578954 ATP5LO75964 103 aa11.03□□□□□ -0.64
SS18-211ENST00000578954 MRPS36P82909 103 aaKnown RBP11.03□□□□□ -0.64
SS18-211ENST00000578954 GAGE6Q13070 117 aa11.03□□□□□ -0.64
SS18-211ENST00000578954 TMEM141Q96I45 108 aa11.03□□□□□ -0.64
SS18-211ENST00000578954 SCGB3A1Q96QR1 104 aa11.03□□□□□ -0.64
SS18-211ENST00000578954 KRTAP3-3Q9BYR6 98 aa11.03□□□□□ -0.64
SS18-211ENST00000578954 KRTAP3-2Q9BYR7 98 aa11.03□□□□□ -0.64
SS18-211ENST00000578954 HSPB8Q9UJY1 196 aa11.03□□□□□ -0.64
SS18-211ENST00000578954 LINC00173Q6ZV60 143 aa11.02□□□□□ -0.65
SS18-211ENST00000578954 IGLV4-3A0A075B6K6 122 aa11.01□□□□□ -0.65
SS18-211ENST00000578954 CASC10Q5T4H9 136 aa11.01□□□□□ -0.65
SS18-211ENST00000578954 WFDC10BQ8IUB3 73 aa11.01□□□□□ -0.65
SS18-211ENST00000578954 IFI27L1Q96BM0 104 aa11.01□□□□□ -0.65
SS18-211ENST00000578954 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11□□□□□ -0.65
SS18-211ENST00000578954 FABP4P15090 132 aa11□□□□□ -0.65
SS18-211ENST00000578954 RBX1P62877 108 aa11□□□□□ -0.65
SS18-211ENST00000578954 MPV17L2Q567V2 206 aa11□□□□□ -0.65
SS18-211ENST00000578954 LINC01556Q5JQF7 62 aa11□□□□□ -0.65
SS18-211ENST00000578954 AMMECR1LQ6DCA0 310 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms