RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TRAV34A0A0B4J273 112 aa9.15□□□□□ -0.94
VPS53-218ENST00000575207 CCL25O15444 150 aa9.15□□□□□ -0.94
VPS53-218ENST00000575207 LINC01559Q495D7 138 aa9.15□□□□□ -0.94
VPS53-218ENST00000575207 KRTAP13-2Q52LG2 175 aa9.15□□□□□ -0.94
VPS53-218ENST00000575207 A0A1W2PPV4 95 aa9.14□□□□□ -0.95
VPS53-218ENST00000575207 NDUFB6O95139 128 aa9.14□□□□□ -0.95
VPS53-218ENST00000575207 SUMO1P63165 101 aaKnown RBP9.14□□□□□ -0.95
VPS53-218ENST00000575207 RNF151Q2KHN1 245 aa9.14□□□□□ -0.95
VPS53-218ENST00000575207 AMMECR1LQ6DCA0 310 aa9.14□□□□□ -0.95
VPS53-218ENST00000575207 A6NHS1 94 aa9.13□□□□□ -0.95
VPS53-218ENST00000575207 KRTAP4-16G5E9R7 235 aaPredicted RBP9.13□□□□□ -0.95
VPS53-218ENST00000575207 M0QY20 66 aa9.13□□□□□ -0.95
VPS53-218ENST00000575207 HMGB3O15347 200 aaKnown RBP9.13□□□□□ -0.95
VPS53-218ENST00000575207 SMIM17P0DL12 118 aa9.13□□□□□ -0.95
VPS53-218ENST00000575207 NKX2-5P52952 324 aaPredicted RBP9.13□□□□□ -0.95
VPS53-218ENST00000575207 RAB32Q13637 225 aa9.13□□□□□ -0.95
VPS53-218ENST00000575207 OPRPNQ99935 248 aaPredicted RBP9.13□□□□□ -0.95
VPS53-218ENST00000575207 WFDC1Q9HC57 220 aa9.13□□□□□ -0.95
VPS53-218ENST00000575207 ARL14EPLP0DKL9 152 aa9.12□□□□□ -0.95
VPS53-218ENST00000575207 COTL1Q14019 142 aa9.12□□□□□ -0.95
VPS53-218ENST00000575207 C19orf71A6NCJ1 209 aa9.11□□□□□ -0.95
VPS53-218ENST00000575207 M0QXV9 152 aa9.11□□□□□ -0.95
VPS53-218ENST00000575207 KRTAP6-3Q3LI67 103 aa9.11□□□□□ -0.95
VPS53-218ENST00000575207 RNASEKQ6P5S7 137 aaKnown RBP9.11□□□□□ -0.95
VPS53-218ENST00000575207 Q86TA4 180 aa9.11□□□□□ -0.95
VPS53-218ENST00000575207 LINC00959A0A1B0GUT2 108 aa9.1□□□□□ -0.95
VPS53-218ENST00000575207 PYDC2Q56P42 97 aa9.1□□□□□ -0.95
VPS53-218ENST00000575207 SPANXN1Q5VSR9 72 aa9.1□□□□□ -0.95
VPS53-218ENST00000575207 RBM38Q9H0Z9 239 aaKnown RBP9.1□□□□□ -0.95
VPS53-218ENST00000575207 MUC21A0A140T8X8 626 aa9.09□□□□□ -0.95
VPS53-218ENST00000575207 BCL2L11O43521 198 aa9.09□□□□□ -0.95
VPS53-218ENST00000575207 C2orf48Q96LS8 159 aa9.09□□□□□ -0.95
VPS53-218ENST00000575207 ANAPC11Q9NYG5 84 aa9.09□□□□□ -0.95
VPS53-218ENST00000575207 CCDC160A6NGH7 325 aa9.08□□□□□ -0.96
VPS53-218ENST00000575207 ESDP10768 282 aa9.08□□□□□ -0.96
VPS53-218ENST00000575207 DEFA3P59666 94 aa9.08□□□□□ -0.96
VPS53-218ENST00000575207 CD164L2Q6UWJ8 174 aa9.08□□□□□ -0.96
VPS53-218ENST00000575207 COX8CQ7Z4L0 72 aa9.08□□□□□ -0.96
VPS53-218ENST00000575207 KRTAP7-1Q8IUC3 87 aa9.08□□□□□ -0.96
VPS53-218ENST00000575207 AP1S3Q96PC3 154 aa9.08□□□□□ -0.96
VPS53-218ENST00000575207 MGPP08493 103 aa9.07□□□□□ -0.96
VPS53-218ENST00000575207 SSTP61278 116 aa9.07□□□□□ -0.96
VPS53-218ENST00000575207 IL15RAQ13261 267 aa9.07□□□□□ -0.96
VPS53-218ENST00000575207 SS18Q15532 418 aa9.07□□□□□ -0.96
VPS53-218ENST00000575207 SUMO4Q6EEV6 95 aa9.07□□□□□ -0.96
VPS53-218ENST00000575207 MALP21145 153 aa9.06□□□□□ -0.96
VPS53-218ENST00000575207 LINC00242Q5T6M2 205 aa9.06□□□□□ -0.96
VPS53-218ENST00000575207 SNAI2O43623 268 aa9.05□□□□□ -0.96
VPS53-218ENST00000575207 RASL11AQ6T310 242 aa9.05□□□□□ -0.96
VPS53-218ENST00000575207 ZFP30Q9Y2G7 519 aa9.05□□□□□ -0.96
VPS53-218ENST00000575207 TNFRSF6BO95407 300 aa9.04□□□□□ -0.96
VPS53-218ENST00000575207 GCHFRP30047 84 aa9.04□□□□□ -0.96
VPS53-218ENST00000575207 S100A5P33763 92 aa9.04□□□□□ -0.96
VPS53-218ENST00000575207 IMMP2LQ96T52 175 aa9.04□□□□□ -0.96
VPS53-218ENST00000575207 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.03□□□□□ -0.96
VPS53-218ENST00000575207 A0A1B0GVG6 124 aa9.03□□□□□ -0.96
VPS53-218ENST00000575207 IGKV2-29A2NJV5 120 aaPredicted RBP9.03□□□□□ -0.96
VPS53-218ENST00000575207 H7C423 109 aa9.03□□□□□ -0.96
VPS53-218ENST00000575207 STAG3L2P0CL84 134 aa9.03□□□□□ -0.96
VPS53-218ENST00000575207 STAG3L3P0CL85 134 aa9.03□□□□□ -0.96
VPS53-218ENST00000575207 XP32Q5T750 250 aa9.03□□□□□ -0.96
VPS53-218ENST00000575207 SCGB1C1Q8TD33 95 aa9.03□□□□□ -0.96
VPS53-218ENST00000575207 NIT2Q9NQR4 276 aa9.03□□□□□ -0.96
VPS53-218ENST00000575207 NAP1L6A6NFF2 107 aa9.02□□□□□ -0.97
VPS53-218ENST00000575207 NUPR1O60356 82 aa9.02□□□□□ -0.97
VPS53-218ENST00000575207 OR5AL1P0C617 328 aa9.02□□□□□ -0.97
VPS53-218ENST00000575207 RPL28P46779 137 aaKnown RBP9.02□□□□□ -0.97
VPS53-218ENST00000575207 FAM229BQ4G0N7 80 aa9.02□□□□□ -0.97
VPS53-218ENST00000575207 PEX7O00628 323 aa9.01□□□□□ -0.97
VPS53-218ENST00000575207 CXCL1P09341 107 aa9.01□□□□□ -0.97
VPS53-218ENST00000575207 ZNF25P17030 456 aaPredicted RBP9.01□□□□□ -0.97
VPS53-218ENST00000575207 LRRC37A5PQ49AS3 106 aa9.01□□□□□ -0.97
VPS53-218ENST00000575207 OR2D3Q8NGH3 330 aa9.01□□□□□ -0.97
VPS53-218ENST00000575207 CTDSP1Q9GZU7 261 aa9.01□□□□□ -0.97
VPS53-218ENST00000575207 COX7A2LO14548 114 aa9□□□□□ -0.97
VPS53-218ENST00000575207 CFC1P0CG37 223 aa9□□□□□ -0.97
VPS53-218ENST00000575207 CDC34P49427 236 aaPredicted RBP9□□□□□ -0.97
VPS53-218ENST00000575207 GAGE2EQ4V326 116 aa9□□□□□ -0.97
VPS53-218ENST00000575207 BTF3L4Q96K17 158 aa9□□□□□ -0.97
VPS53-218ENST00000575207 TMEM167BQ9NRX6 74 aa9□□□□□ -0.97
VPS53-218ENST00000575207 MRPL35Q9NZE8 188 aaKnown RBP9□□□□□ -0.97
VPS53-218ENST00000575207 GAGE2DQ9UEU5 116 aa9□□□□□ -0.97
VPS53-218ENST00000575207 V9GYH0 126 aa9□□□□□ -0.97
VPS53-218ENST00000575207 IGKV2D-26A0A0A0MRZ7 120 aa8.99□□□□□ -0.97
VPS53-218ENST00000575207 TMEM101Q96IK0 257 aa8.99□□□□□ -0.97
VPS53-218ENST00000575207 A0A1W2PRE2 83 aa8.98□□□□□ -0.97
VPS53-218ENST00000575207 TLX1NBP0CAT3 122 aa8.98□□□□□ -0.97
VPS53-218ENST00000575207 NTF3P20783 257 aa8.98□□□□□ -0.97
VPS53-218ENST00000575207 SPAG11BQ08648 103 aa8.98□□□□□ -0.97
VPS53-218ENST00000575207 KRTAP20-1Q3LI63 56 aa8.97□□□□□ -0.97
VPS53-218ENST00000575207 Q6ZNX1 250 aa8.97□□□□□ -0.97
VPS53-218ENST00000575207 RAB24Q969Q5 203 aa8.97□□□□□ -0.97
VPS53-218ENST00000575207 G3V3Q6 166 aa8.96□□□□□ -0.98
VPS53-218ENST00000575207 NCR2O95944 276 aa8.96□□□□□ -0.98
VPS53-218ENST00000575207 TRIQKQ629K1 86 aa8.96□□□□□ -0.98
VPS53-218ENST00000575207 HIST1H2BAQ96A08 127 aa8.96□□□□□ -0.98
VPS53-218ENST00000575207 SMDT1Q9H4I9 107 aa8.96□□□□□ -0.98
VPS53-218ENST00000575207 APCSP02743 223 aa8.95□□□□□ -0.98
VPS53-218ENST00000575207 BTCP35070 178 aa8.95□□□□□ -0.98
VPS53-218ENST00000575207 UBE2G1P62253 170 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms