RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 KIAA1644Q3SXP7 199 aa12.37□□□□□ -0.43
CCDC40-213ENST00000574933 Q6ZR54 194 aa12.37□□□□□ -0.43
CCDC40-213ENST00000574933 NIT1Q86X76 327 aa12.37□□□□□ -0.43
CCDC40-213ENST00000574933 CHCHD7Q9BUK0 85 aa12.37□□□□□ -0.43
CCDC40-213ENST00000574933 SACSQ9NZJ4 4579 aa12.37□□□□□ -0.43
CCDC40-213ENST00000574933 NBDYA0A0U1RRE5 68 aa12.36□□□□□ -0.43
CCDC40-213ENST00000574933 COLCA2A8K830 154 aa12.36□□□□□ -0.43
CCDC40-213ENST00000574933 FABP9Q0Z7S8 132 aa12.36□□□□□ -0.43
CCDC40-213ENST00000574933 ALKBH7Q9BT30 221 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-213ENST00000574933 IGLV2-18A0A075B6J9 118 aa12.35□□□□□ -0.43
CCDC40-213ENST00000574933 TCAPO15273 167 aa12.35□□□□□ -0.43
CCDC40-213ENST00000574933 SCO1O75880 301 aa12.35□□□□□ -0.43
CCDC40-213ENST00000574933 ESDP10768 282 aa12.35□□□□□ -0.43
CCDC40-213ENST00000574933 PKIAP61925 76 aa12.35□□□□□ -0.43
CCDC40-213ENST00000574933 KIR2DL4Q99706 377 aa12.35□□□□□ -0.43
CCDC40-213ENST00000574933 TMEM243Q9BU79 118 aa12.35□□□□□ -0.43
CCDC40-213ENST00000574933 AMTP48728 403 aa12.34□□□□□ -0.43
CCDC40-213ENST00000574933 TTC32Q5I0X7 151 aa12.34□□□□□ -0.43
CCDC40-213ENST00000574933 MAP1LC3AQ9H492 121 aa12.34□□□□□ -0.43
CCDC40-213ENST00000574933 H7C423 109 aa12.33□□□□□ -0.44
CCDC40-213ENST00000574933 CHCHD5Q9BSY4 110 aa12.33□□□□□ -0.44
CCDC40-213ENST00000574933 BTF3P20290 206 aaKnown RBP12.32□□□□□ -0.44
CCDC40-213ENST00000574933 C10orf126Q8N4M7 172 aa12.32□□□□□ -0.44
CCDC40-213ENST00000574933 Q8N8P6 123 aa12.32□□□□□ -0.44
CCDC40-213ENST00000574933 DEFB104AQ8WTQ1 72 aa12.32□□□□□ -0.44
CCDC40-213ENST00000574933 KRTAP1-5Q9BYS1 174 aa12.32□□□□□ -0.44
CCDC40-213ENST00000574933 TRAV9-2A0A087WT02 112 aa12.31□□□□□ -0.44
CCDC40-213ENST00000574933 NXT2Q9NPJ8 142 aaKnown RBP12.31□□□□□ -0.44
CCDC40-213ENST00000574933 A0A1B0GUV1 79 aa12.3□□□□□ -0.44
CCDC40-213ENST00000574933 K7EMI3 77 aa12.3□□□□□ -0.44
CCDC40-213ENST00000574933 RAB5AP20339 215 aa12.3□□□□□ -0.44
CCDC40-213ENST00000574933 FCER1GP30273 86 aa12.3□□□□□ -0.44
CCDC40-213ENST00000574933 A0A087WX48 190 aa12.29□□□□□ -0.44
CCDC40-213ENST00000574933 IGHV3-30P01768 117 aa12.29□□□□□ -0.44
CCDC40-213ENST00000574933 IGHV3-33P01772 117 aa12.29□□□□□ -0.44
CCDC40-213ENST00000574933 IGHV3-30-3P0DP02 117 aa12.29□□□□□ -0.44
CCDC40-213ENST00000574933 IGHV3-30-5P0DP03 117 aa12.29□□□□□ -0.44
CCDC40-213ENST00000574933 GAGE6Q13070 117 aa12.29□□□□□ -0.44
CCDC40-213ENST00000574933 MPV17L2Q567V2 206 aa12.29□□□□□ -0.44
CCDC40-213ENST00000574933 Q8N3U1 123 aa12.29□□□□□ -0.44
CCDC40-213ENST00000574933 LOC389332A0A1B0GUA5 103 aa12.28□□□□□ -0.44
CCDC40-213ENST00000574933 LINC01546A6NGU7 62 aa12.28□□□□□ -0.44
CCDC40-213ENST00000574933 IBA57-AS1B1ANH7 110 aa12.28□□□□□ -0.44
CCDC40-213ENST00000574933 TMEM262E9PQX1 116 aa12.28□□□□□ -0.44
CCDC40-213ENST00000574933 M0R2N4 97 aa12.28□□□□□ -0.44
CCDC40-213ENST00000574933 LAGE3Q14657 143 aa12.28□□□□□ -0.44
CCDC40-213ENST00000574933 UBE2L6O14933 153 aa12.27□□□□□ -0.45
CCDC40-213ENST00000574933 IFI27P40305 119 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-213ENST00000574933 RBX1P62877 108 aa12.27□□□□□ -0.45
CCDC40-213ENST00000574933 MRPL52Q86TS9 123 aaKnown RBP12.27□□□□□ -0.45
CCDC40-213ENST00000574933 C20orf203Q8NBC4 194 aa12.27□□□□□ -0.45
CCDC40-213ENST00000574933 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.26□□□□□ -0.45
CCDC40-213ENST00000574933 IGKV2-29A2NJV5 120 aaPredicted RBP12.26□□□□□ -0.45
CCDC40-213ENST00000574933 TRGC2P03986 189 aa12.26□□□□□ -0.45
CCDC40-213ENST00000574933 C18orf32Q8TCD1 76 aa12.26□□□□□ -0.45
CCDC40-213ENST00000574933 ZNF25P17030 456 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-213ENST00000574933 Q8N976 141 aa12.25□□□□□ -0.45
CCDC40-213ENST00000574933 TMEM18Q96B42 140 aa12.25□□□□□ -0.45
CCDC40-213ENST00000574933 HYDINQ4G0P3 5121 aa12.25□□□□□ -0.45
CCDC40-213ENST00000574933 RYR2Q92736 4967 aa12.24□□□□□ -0.45
CCDC40-213ENST00000574933 FGF6P10767 208 aa12.24□□□□□ -0.45
CCDC40-213ENST00000574933 ORMDL2Q53FV1 153 aa12.24□□□□□ -0.45
CCDC40-213ENST00000574933 PRSS3P2Q8NHM4 247 aa12.24□□□□□ -0.45
CCDC40-213ENST00000574933 TIMM21Q9BVV7 248 aa12.24□□□□□ -0.45
CCDC40-213ENST00000574933 CSDC2Q9Y534 153 aaKnown RBP12.24□□□□□ -0.45
CCDC40-213ENST00000574933 SMAGPQ0VAQ4 97 aa12.23□□□□□ -0.45
CCDC40-213ENST00000574933 C6orf223Q8N319 242 aa12.23□□□□□ -0.45
CCDC40-213ENST00000574933 PRR34Q9NV39 138 aa12.23□□□□□ -0.45
CCDC40-213ENST00000574933 KLK12Q9UKR0 248 aa12.23□□□□□ -0.45
CCDC40-213ENST00000574933 IGLV4-60A0A075B6I1 120 aa12.22□□□□□ -0.45
CCDC40-213ENST00000574933 C1orf134Q5TEV5 83 aa12.22□□□□□ -0.45
CCDC40-213ENST00000574933 AMMECR1LQ6DCA0 310 aa12.22□□□□□ -0.45
CCDC40-213ENST00000574933 ANGP03950 147 aaKnown RBP12.21□□□□□ -0.45
CCDC40-213ENST00000574933 URB1-AS1Q96HZ7 61 aa12.21□□□□□ -0.45
CCDC40-213ENST00000574933 UBE2D4Q9Y2X8 147 aa12.21□□□□□ -0.45
CCDC40-213ENST00000574933 TRAV8-3A0A0A6YYJ7 113 aa12.2□□□□□ -0.46
CCDC40-213ENST00000574933 G0S2P27469 103 aa12.2□□□□□ -0.46
CCDC40-213ENST00000574933 RPL39P62891 51 aaKnown RBP12.2□□□□□ -0.46
CCDC40-213ENST00000574933 Q0VG73 95 aa12.2□□□□□ -0.46
CCDC40-213ENST00000574933 RNASEKQ6P5S7 137 aaKnown RBP12.2□□□□□ -0.46
CCDC40-213ENST00000574933 Q6ZRN7 208 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-213ENST00000574933 FA2HQ7L5A8 372 aa12.2□□□□□ -0.46
CCDC40-213ENST00000574933 NFE4Q86UQ8 179 aa12.2□□□□□ -0.46
CCDC40-213ENST00000574933 ENHOQ6UWT2 76 aa12.19□□□□□ -0.46
CCDC40-213ENST00000574933 TMEM101Q96IK0 257 aa12.19□□□□□ -0.46
CCDC40-213ENST00000574933 SPANXA1Q9NS26 97 aa12.19□□□□□ -0.46
CCDC40-213ENST00000574933 PYGO1Q9Y3Y4 419 aa12.19□□□□□ -0.46
CCDC40-213ENST00000574933 RTL8CO15255 209 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 LINC00614P0C842 121 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 RAB5BP61020 215 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 C2orf66Q6UXQ4 117 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 LINC00269Q8N2A0 174 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 OR5A1Q8NGJ0 315 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 CDC42SE2Q9NRR3 84 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 AP5S1Q9NUS5 200 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 CYSLTR1Q9Y271 337 aa12.18□□□□□ -0.46
CCDC40-213ENST00000574933 LINC01549A6NIU2 74 aa12.17□□□□□ -0.46
CCDC40-213ENST00000574933 MRPS36P82909 103 aaKnown RBP12.17□□□□□ -0.46
CCDC40-213ENST00000574933 MIAQ16674 131 aa12.17□□□□□ -0.46
CCDC40-213ENST00000574933 FAM104AQ969W3 186 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms