RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 FAM231CP0DMU5 169 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 IGHV3-30-5P0DP03 117 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 FHL3Q13643 280 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 DEFB121Q5J5C9 76 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 GPHB5Q86YW7 130 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 C10orf126Q8N4M7 172 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 AMELXQ99217 191 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 TIMM17AQ99595 171 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 DPH3P1Q9H4G8 78 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 NOTCH3Q9UM47 2321 aa4.92□□□□□ -1.62
NUP88-206ENST00000573169 IGLV4-69A0A075B6H9 119 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 TRBV7-1A0A0A6YYK4 115 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 A0A0J9YX75 114 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 TRBV6-5A0A0K0K1A5 114 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 ZNF815PA8K554 130 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 A8MWV9 139 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 MT-ATP8P03928 68 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 CRYGDP07320 174 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 CRIP2P52943 208 aaPredicted RBP4.91□□□□□ -1.62
NUP88-206ENST00000573169 POLR2KP53803 58 aaKnown RBP4.91□□□□□ -1.62
NUP88-206ENST00000573169 XGP55808 180 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 LINC00315P59091 139 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 HERVK_113P61574 105 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 SPANXN1Q5VSR9 72 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 C2orf66Q6UXQ4 117 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 Q8N9W7 124 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 GLMPQ8WWB7 406 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 DUX3Q96PT4 197 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 KIF25-AS1Q9Y6Z4 181 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 RYR3Q15413 4870 aa4.91□□□□□ -1.62
NUP88-206ENST00000573169 KMT2CQ8NEZ4 4911 aaKnown RBP4.91□□□□□ -1.62
NUP88-206ENST00000573169 TRAV21A0A0B4J279 112 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 A0A0B4J2C4 111 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 RHODO00212 210 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 OVOL1O14753 267 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 TCL1BO95988 128 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 TSHBP01222 138 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 CFC1BP0CG36 223 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 CFC1P0CG37 223 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 PPIFP30405 207 aaKnown RBP4.9□□□□□ -1.63
NUP88-206ENST00000573169 RPL13AP40429 203 aaKnown RBP4.9□□□□□ -1.63
NUP88-206ENST00000573169 HES1Q14469 280 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 PMVKQ15126 192 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 MRPL23Q16540 153 aaKnown RBP4.9□□□□□ -1.63
NUP88-206ENST00000573169 C19orf54Q5BKX5 351 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 IGFL4Q6B9Z1 124 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 ZFP2Q6ZN57 461 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 ZFAND2AQ8N6M9 145 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 C5orf56Q8N8D9 126 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 PLEKHB2Q96CS7 222 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 PRO1854Q9UHT4 67 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 MOB4Q9Y3A3 225 aa4.9□□□□□ -1.63
NUP88-206ENST00000573169 TRAV26-2A0A0B4J265 109 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 SOCS3O14543 225 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 PSMB2P49721 201 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 GAGE5Q13069 117 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 GAGE6Q13070 117 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 ZNF876PQ49A33 203 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 ZFAND6Q6FIF0 208 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 EEF1AKMT3Q96AZ1 226 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 RNF183Q96D59 192 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 METTL26Q96S19 204 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 S4R3C0 116 aa4.89□□□□□ -1.63
NUP88-206ENST00000573169 TRBV27A0A0K0K1C4 114 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 VCYO14598 125 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 IGHV3-33P01772 117 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 IGHG2P01859 326 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 NHLRC4P0CG21 123 aaPredicted RBP4.88□□□□□ -1.63
NUP88-206ENST00000573169 SLURP1P55000 103 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 EGFEM1PQ0D2K5 195 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 SRSF9Q13242 221 aaKnown RBP eCLIP4.88□□□□□ -1.63
NUP88-206ENST00000573169 DEFB136Q30KP8 78 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 C15orf32Q32M92 178 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 KRTAP19-4Q3LI73 84 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 PRR9Q5T870 116 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 SCGB1D4Q6XE38 83 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 RNF182Q8N6D2 247 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 KLHL30-AS1Q8NEE0 82 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 TMEM263Q8WUH6 116 aaKnown RBP4.88□□□□□ -1.63
NUP88-206ENST00000573169 UFC1Q9Y3C8 167 aa4.88□□□□□ -1.63
NUP88-206ENST00000573169 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.87□□□□□ -1.63
NUP88-206ENST00000573169 TRBV30A0A0K0K1B3 111 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 SDHAF1A6NFY7 115 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 FAM223BA6NKX1 122 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 H3BVH4 76 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 LGALS9O00182 355 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 LEPROTO15243 131 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 SCGB1C2P0DMR2 95 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 RNASE3P12724 160 aaKnown RBP4.87□□□□□ -1.63
NUP88-206ENST00000573169 RHOHQ15669 191 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 FAM223AQ8IWN6 122 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 ANKRD29Q8N6D5 301 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 SPANXDQ9BXN6 97 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 EDA2RQ9HAV5 297 aa4.87□□□□□ -1.63
NUP88-206ENST00000573169 COL7A1Q02388 2944 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 LOC107984156A0A0G2JMH3 177 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 FAM240AA0A1B0GVK7 77 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 J3QQQ9 107 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 CCL24O00175 119 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 SLC25A20O43772 301 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms