RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 PLNP26678 52 aa7.23□□□□□ -1.25
VPS53-206ENST00000570359 FXYD2P54710 66 aa7.23□□□□□ -1.25
VPS53-206ENST00000570359 TRPT1Q86TN4 253 aaKnown RBP7.23□□□□□ -1.25
VPS53-206ENST00000570359 FABP2P12104 132 aa7.23□□□□□ -1.25
VPS53-206ENST00000570359 OR11H2Q8NH07 326 aa7.23□□□□□ -1.25
VPS53-206ENST00000570359 TNFRSF18Q9Y5U5 241 aa7.23□□□□□ -1.25
VPS53-206ENST00000570359 M0R2P5 195 aa7.22□□□□□ -1.25
VPS53-206ENST00000570359 PF4P02776 101 aa7.22□□□□□ -1.25
VPS53-206ENST00000570359 PRADC1Q9BSG0 188 aa7.22□□□□□ -1.25
VPS53-206ENST00000570359 NHP2Q9NX24 153 aaKnown RBP7.22□□□□□ -1.25
VPS53-206ENST00000570359 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.22□□□□□ -1.25
VPS53-206ENST00000570359 IGKV2-29A2NJV5 120 aaPredicted RBP7.22□□□□□ -1.25
VPS53-206ENST00000570359 GAGE12HA6NDE8 117 aa7.22□□□□□ -1.25
VPS53-206ENST00000570359 HIST1H4GQ99525 98 aa7.22□□□□□ -1.25
VPS53-206ENST00000570359 FHL3Q13643 280 aa7.21□□□□□ -1.25
VPS53-206ENST00000570359 SCGB1D4Q6XE38 83 aa7.21□□□□□ -1.25
VPS53-206ENST00000570359 GTSF1LQ9H1H1 148 aa7.21□□□□□ -1.25
VPS53-206ENST00000570359 TEX48A0A1B0GUV7 120 aa7.21□□□□□ -1.26
VPS53-206ENST00000570359 HILS1P60008 231 aa7.21□□□□□ -1.26
VPS53-206ENST00000570359 CFAP126Q5VTH2 177 aa7.21□□□□□ -1.26
VPS53-206ENST00000570359 C1orf158Q8N1D5 194 aa7.21□□□□□ -1.26
VPS53-206ENST00000570359 SPATA3Q8NHX4 192 aa7.21□□□□□ -1.26
VPS53-206ENST00000570359 F8P00451 2351 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 TRBV27A0A0K0K1C4 114 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 ZNF815PA8K554 130 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 I3L3M4 83 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 KRTAP10-3P60369 221 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 CKS1BP61024 79 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 SMAGPQ0VAQ4 97 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 Q6ZTI0 123 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 NOP10Q9NPE3 64 aaKnown RBP7.2□□□□□ -1.26
VPS53-206ENST00000570359 IGIPA6NJ69 53 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 SFTA2Q6UW10 78 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 PLEKHB2Q96CS7 222 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 TRAV12-1A0A0B4J245 112 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 F8W1H4 67 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 PMVKQ15126 192 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 POM121L12Q8N7R1 296 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 C11orf72Q8NBR9 251 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 ZNF479Q96JC4 524 aa7.2□□□□□ -1.26
VPS53-206ENST00000570359 IGLV4-69A0A075B6H9 119 aa7.19□□□□□ -1.26
VPS53-206ENST00000570359 SAMD5Q5TGI4 173 aa7.19□□□□□ -1.26
VPS53-206ENST00000570359 ZNRF2Q8NHG8 242 aa7.19□□□□□ -1.26
VPS53-206ENST00000570359 A0A0J9YXV3 536 aa7.19□□□□□ -1.26
VPS53-206ENST00000570359 GAGE7O76087 117 aa7.19□□□□□ -1.26
VPS53-206ENST00000570359 GAGE12FP0CL80 117 aa7.19□□□□□ -1.26
VPS53-206ENST00000570359 GAGE12GP0CL81 117 aa7.19□□□□□ -1.26
VPS53-206ENST00000570359 GAGE12IP0CL82 117 aa7.19□□□□□ -1.26
VPS53-206ENST00000570359 RPL24P83731 157 aaKnown RBP7.19□□□□□ -1.26
VPS53-206ENST00000570359 ADARB2-AS1A8MUL3 147 aa7.18□□□□□ -1.26
VPS53-206ENST00000570359 A8MWV9 139 aa7.18□□□□□ -1.26
VPS53-206ENST00000570359 CRYBA4P53673 196 aa7.18□□□□□ -1.26
VPS53-206ENST00000570359 TRRAPQ9Y4A5 3859 aa7.18□□□□□ -1.26
VPS53-206ENST00000570359 TRAV26-1A0A087WT03 109 aa7.18□□□□□ -1.26
VPS53-206ENST00000570359 MYMXA0A1B0GTQ4 84 aa7.18□□□□□ -1.26
VPS53-206ENST00000570359 SMIM13P0DJ93 91 aa7.18□□□□□ -1.26
VPS53-206ENST00000570359 VCX2Q9H322 139 aa7.18□□□□□ -1.26
VPS53-206ENST00000570359 SPANXB1Q9NS25 103 aaPredicted RBP7.18□□□□□ -1.26
VPS53-206ENST00000570359 TRBV6-5A0A0K0K1A5 114 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 TSPEAR-AS2P59090 65 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 C20orf203Q8NBC4 194 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 HIGD1BQ9P298 99 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 TRGV2A0A075B6R0 118 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 TRAV2A0A0B4J234 112 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 GAGE12JA6NER3 117 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 GAGE4Q13068 117 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 GAGE5Q13069 117 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 SRSF9Q13242 221 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS53-206ENST00000570359 GAGE13Q4V321 117 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 SPXQ9BT56 116 aa7.17□□□□□ -1.26
VPS53-206ENST00000570359 LINC00467Q9BRT7 94 aa7.16□□□□□ -1.26
VPS53-206ENST00000570359 IGLV4-3A0A075B6K6 122 aa7.16□□□□□ -1.26
VPS53-206ENST00000570359 TSPAN13O95857 204 aa7.16□□□□□ -1.26
VPS53-206ENST00000570359 CEND1Q8N111 149 aa7.16□□□□□ -1.26
VPS53-206ENST00000570359 LINC00482Q8N8I6 264 aa7.16□□□□□ -1.26
VPS53-206ENST00000570359 C16orf95Q9H693 158 aa7.16□□□□□ -1.26
VPS53-206ENST00000570359 LOC100131303A0A0U1RQF7 123 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 A8MZ25 164 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 HERVK_113P61574 105 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 TMEM141Q96I45 108 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 TIMM17AQ99595 171 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 TRAV25A0A0B4J276 109 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 IGKV3OR2-268A0A0C4DH90 116 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 A8MTW9 85 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 E9PLD3 99 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 IGLV1-51P01701 117 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 RHOHQ15669 191 aa7.15□□□□□ -1.26
VPS53-206ENST00000570359 TRAV8-3A0A0A6YYJ7 113 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 DEFB4AO15263 64 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 NDUFA7O95182 113 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 DEFB130BP0DP73 79 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 DEFB130AP0DP74 79 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 Q6ZUT4 128 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 GEMIN7Q9H840 131 aaKnown RBP7.14□□□□□ -1.27
VPS53-206ENST00000570359 APOMO95445 188 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 GIG44P09565 113 aaPredicted RBP7.14□□□□□ -1.27
VPS53-206ENST00000570359 LGALS3P17931 250 aaKnown RBP7.14□□□□□ -1.27
VPS53-206ENST00000570359 RRN3P1Q2M238 152 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 DGAT2L7PQ6IED9 249 aa7.14□□□□□ -1.27
VPS53-206ENST00000570359 NPC2P61916 151 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms