RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TRBV7-3A0A075B6L6 115 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 TRAV9-2A0A087WT02 112 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 TRGV4A0A0C4DH28 118 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 SPART-AS1P0CW21 52 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 COTL1Q14019 142 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 C2orf66Q6UXQ4 117 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 Q6ZTI0 123 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 LINC00612Q8N6U2 182 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 OR11H2Q8NH07 326 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 SCGB3A1Q96QR1 104 aa5.71□□□□□ -1.5
VPS39-213ENST00000570062 A0A096LNJ9 63 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 GAGE12BA1L429 117 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 PLAC8L1A1L4L8 177 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 H7C423 109 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 K7EQD1 137 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 GAGE7O76087 117 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 GAS8-AS1O95177 125 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 GAGE12FP0CL80 117 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 GAGE12GP0CL81 117 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 GAGE12IP0CL82 117 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 PLNP26678 52 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 SH2D6Q7Z4S9 175 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 ZMAT4Q9H898 229 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 PYGO1Q9Y3Y4 419 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 X6R8D5 127 aa5.7□□□□□ -1.5
VPS39-213ENST00000570062 C20orf203Q8NBC4 194 aa5.69□□□□□ -1.5
VPS39-213ENST00000570062 NEXN-AS1Q8NBZ9 246 aa5.69□□□□□ -1.5
VPS39-213ENST00000570062 PMCHL2Q9BQD1 86 aa5.69□□□□□ -1.5
VPS39-213ENST00000570062 GTSF1LQ9H1H1 148 aa5.69□□□□□ -1.5
VPS39-213ENST00000570062 PRO0255Q9UI72 69 aa5.69□□□□□ -1.5
VPS39-213ENST00000570062 RYR3Q15413 4870 aa5.69□□□□□ -1.5
VPS39-213ENST00000570062 WNK1Q9H4A3 2382 aa5.69□□□□□ -1.5
VPS39-213ENST00000570062 A0A087WX48 190 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 IGHV3-73A0A0B4J1V6 119 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 DPM2O94777 84 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 PRM2P04554 102 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 DEFB135Q30KP9 77 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 SLC25A29Q8N8R3 303 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 Q8N976 141 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 ZNF479Q96JC4 524 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 TIMM21Q9BVV7 248 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 KRTAP17-1Q9BYP8 105 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 SPANXA1Q9NS26 97 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 HHLA3Q9XRX5 114 aa5.68□□□□□ -1.5
VPS39-213ENST00000570062 IGIPA6NJ69 53 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 TSHBP01222 138 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 IGKCP01834 107 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 ATP5G1P05496 136 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 EMP1P54849 157 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 KRTAP10-11P60412 298 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 UBE2D3P61077 147 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 DAD1P61803 113 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 UBE2D2P62837 147 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 PMVKQ15126 192 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 KPRPQ5T749 579 aaPredicted RBP5.67□□□□□ -1.5
VPS39-213ENST00000570062 ZNF664Q8N3J9 261 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 ZNRF2Q8NHG8 242 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 VCX2Q9H322 139 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 DKK2Q9UBU2 259 aa5.67□□□□□ -1.5
VPS39-213ENST00000570062 CSDC2Q9Y534 153 aaKnown RBP5.67□□□□□ -1.5
VPS39-213ENST00000570062 IGHV4-28A0A0C4DH34 117 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 F8VRH5 84 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 DEFB130BP0DP73 79 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 DEFB130AP0DP74 79 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 FHL2Q14192 279 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 SPATA45Q537H7 98 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 FAM222AQ5U5X8 452 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 MRPL52Q86TS9 123 aaKnown RBP5.66□□□□□ -1.5
VPS39-213ENST00000570062 Q8NAQ8 132 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 MIEN1Q9BRT3 115 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 C11orf68Q9H3H3 251 aaKnown RBP5.66□□□□□ -1.5
VPS39-213ENST00000570062 UQCR10Q9UDW1 63 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 CHTOPQ9Y3Y2 248 aaKnown RBP5.66□□□□□ -1.5
VPS39-213ENST00000570062 KMT2CQ8NEZ4 4911 aaKnown RBP5.66□□□□□ -1.5
VPS39-213ENST00000570062 SORL1Q92673 2214 aa5.66□□□□□ -1.5
VPS39-213ENST00000570062 TRBV25-1A0A075B6N4 114 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 TRAV26-1A0A087WT03 109 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 G3V4G9 280 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 H0Y8G0 127 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 ZNF25P17030 456 aaPredicted RBP5.65□□□□□ -1.5
VPS39-213ENST00000570062 DDTP30046 118 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 SEC11AP67812 179 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 MRPS36P82909 103 aaKnown RBP5.65□□□□□ -1.5
VPS39-213ENST00000570062 ODF1Q14990 250 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 DGAT2L7PQ6IED9 249 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 Q6ZSN1 163 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 LINC00173Q6ZV60 143 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 TMEM101Q96IK0 257 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 SPATA25Q9BR10 227 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 C2orf88Q9BSF0 95 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 PAM16Q9Y3D7 125 aa5.65□□□□□ -1.5
VPS39-213ENST00000570062 AGRNO00468 2067 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 PRSS29PA6NIE9 313 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 PCP4L1A6NKN8 68 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 H3BNG1 76 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 UBE2L6O14933 153 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 P0DMU3 169 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 FAM231AP0DMU4 169 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 FAM231CP0DMU5 169 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 HERVK_113P61574 105 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms