RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 H3BQ85 93 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 TSHBP01222 138 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 TRGV3P03979 118 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 PRM2P04554 102 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 CTSGP08311 255 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 PATE4P0C8F1 98 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 ELOF1P60002 83 aaKnown RBP2.96□□□□□ -1.94
VPS39-212ENST00000570023 NREPQ16612 68 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 C15orf32Q32M92 178 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 KRTAP24-1Q3LI83 254 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 NOTCH2NLQ7Z3S9 236 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 SMIM29Q86T20 159 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 LINC00337Q8N6G1 96 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 ITLN2Q8WWU7 325 aaPredicted RBP2.96□□□□□ -1.94
VPS39-212ENST00000570023 FGF23Q9GZV9 251 aaPredicted RBP2.96□□□□□ -1.94
VPS39-212ENST00000570023 CDC42SE1Q9NRR8 79 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 ARID1AO14497 2285 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 HEATR5BQ9P2D3 2071 aa2.96□□□□□ -1.94
VPS39-212ENST00000570023 IGHV1-18A0A0C4DH31 117 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 C3orf84H3BNL1 204 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 PSPHP1O15172 72 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 PSCAO43653 123 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 IGHV3-30-3P0DP02 117 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 ZNF32P17041 273 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 KRTAP10-6P60371 365 aaPredicted RBP2.95□□□□□ -1.94
VPS39-212ENST00000570023 PRR3P79522 188 aaKnown RBP2.95□□□□□ -1.94
VPS39-212ENST00000570023 Q5VV11 94 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 Q75L30 129 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 ZNF625Q96I27 306 aaPredicted RBP2.95□□□□□ -1.94
VPS39-212ENST00000570023 ORMDL1Q9P0S3 153 aa2.95□□□□□ -1.94
VPS39-212ENST00000570023 MYO9BQ13459 2157 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 SHANK1Q9Y566 2161 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 TRAV10A0A0B4J240 114 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 TRBV6-5A0A0K0K1A5 114 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 LOC101927531A0A1B0GV80 90 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 A0A1B0GW54 56 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 C5orf67F2Z3F1 127 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 H3BRN7 92 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 CHKB-CPT1BH3BT56 60 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 NDUFA1O15239 70 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 NDUFB1O75438 58 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 POLR2KP53803 58 aaKnown RBP2.94□□□□□ -1.94
VPS39-212ENST00000570023 LINC01547P58512 204 aaPredicted RBP2.94□□□□□ -1.94
VPS39-212ENST00000570023 FBXL19-AS1Q494R0 122 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 C9orf116Q5BN46 136 aaPredicted RBP2.94□□□□□ -1.94
VPS39-212ENST00000570023 Q6ZS52 159 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 C1orf64Q8NEQ6 169 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 SPTSSBQ8NFR3 76 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 TMEM167AQ8TBQ9 72 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 LINC00308Q8TCZ7 52 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 LINC00167Q96N53 147 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 COL4A5P29400 1685 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 MYOFQ9NZM1 2061 aa2.94□□□□□ -1.94
VPS39-212ENST00000570023 ADAMTS9Q9P2N4 1935 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 TANC2Q9HCD6 1990 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 LOC110117498A0A087WWA1 95 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 IGKV3D-11A0A0A0MRZ8 115 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 LCE6AA0A183 80 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 SCXQ7RTU7 201 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 FAM218AQ96MZ4 157 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 ARRDC1-AS1Q9H2J1 176 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 Q9HAA7 133 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 LTBP2Q14767 1821 aa2.93□□□□□ -1.94
VPS39-212ENST00000570023 MPDZO75970 2070 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 FREM3P0C091 2139 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 IGHV6-1A0A0B4J1U7 121 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 IGHV7-4-1A0A0J9YVY3 117 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 BPY2O14599 106 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 LY6HO94772 140 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 SAA2P0DJI9 122 aaPredicted RBP2.92□□□□□ -1.94
VPS39-212ENST00000570023 C6orf99Q4VX62 202 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 FAM74A4Q5TZK3 123 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 MIR7-3HGQ8N6C7 128 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 C11orf72Q8NBR9 251 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 CDC42SE2Q9NRR3 84 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 Q9Y3F1 56 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 LENEPQ9Y5L5 61 aa2.92□□□□□ -1.94
VPS39-212ENST00000570023 IGLV3-12A0A075B6K2 115 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 TRAV21A0A0B4J279 112 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 IGKV3D-20A0A0C4DH25 116 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 C10orf142B7Z368 130 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 LINC01565O15544 149 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 ZNHIT1O43257 154 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 IGKV1-16P04430 117 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 LYZP61626 148 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 WT1-ASQ06250 92 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 RPL39P5Q59GN2 51 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 WFDC9Q8NEX5 89 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 OCR1Q9BZK8 76 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 DYSFO75923 2080 aa2.91□□□□□ -1.94
VPS39-212ENST00000570023 TET1Q8NFU7 2136 aa2.9□□□□□ -1.94
VPS39-212ENST00000570023 DEFB108AA8MXU0 73 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 K7EQG2 157 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 NCR3O14931 201 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 CRPP02741 224 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 CGB3P0DN86 165 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 CGB7P0DN87 165 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 RPL27AP46776 148 aaKnown RBP2.9□□□□□ -1.95
VPS39-212ENST00000570023 DEFB114Q30KQ6 69 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 C9orf66Q5T8R8 295 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms