RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 DGAT2L7PQ6IED9 249 aa14.59□□□□□ -0.07
CLN3-232ENST00000568443 KRTAP26-1Q6PEX3 210 aa14.59□□□□□ -0.07
CLN3-232ENST00000568443 SMIM15Q7Z3B0 74 aa14.59□□□□□ -0.07
CLN3-232ENST00000568443 C20orf203Q8NBC4 194 aa14.59□□□□□ -0.07
CLN3-232ENST00000568443 CIRBP-AS1Q8TBR5 109 aa14.59□□□□□ -0.07
CLN3-232ENST00000568443 UBE2L6O14933 153 aa14.58□□□□□ -0.08
CLN3-232ENST00000568443 GATCO43716 136 aaKnown RBP14.58□□□□□ -0.08
CLN3-232ENST00000568443 IGLV4-60A0A075B6I1 120 aa14.57□□□□□ -0.08
CLN3-232ENST00000568443 TRAV8-4A0A0B4J246 113 aa14.57□□□□□ -0.08
CLN3-232ENST00000568443 AMTP48728 403 aa14.57□□□□□ -0.08
CLN3-232ENST00000568443 CEBPGP53567 150 aa14.57□□□□□ -0.08
CLN3-232ENST00000568443 GATD1Q8NB37 220 aa14.57□□□□□ -0.08
CLN3-232ENST00000568443 GTSF1Q8WW33 167 aa14.57□□□□□ -0.08
CLN3-232ENST00000568443 TRAV26-2A0A0B4J265 109 aa14.56□□□□□ -0.08
CLN3-232ENST00000568443 LYPD6BQ8NI32 183 aa14.56□□□□□ -0.08
CLN3-232ENST00000568443 A8MWL6 223 aa14.55□□□□□ -0.08
CLN3-232ENST00000568443 FAM231DQ6ZW35 169 aa14.55□□□□□ -0.08
CLN3-232ENST00000568443 CLRN3Q8NCR9 226 aa14.55□□□□□ -0.08
CLN3-232ENST00000568443 C9orf163Q8N9P6 203 aa14.54□□□□□ -0.08
CLN3-232ENST00000568443 GFRA4Q9GZZ7 299 aa14.54□□□□□ -0.08
CLN3-232ENST00000568443 J3QL48 77 aa14.53□□□□□ -0.08
CLN3-232ENST00000568443 TEX261Q6UWH6 196 aa14.53□□□□□ -0.08
CLN3-232ENST00000568443 EIF5A2Q9GZV4 153 aaKnown RBP14.53□□□□□ -0.08
CLN3-232ENST00000568443 FOXA3P55318 350 aaPredicted RBP14.52□□□□□ -0.09
CLN3-232ENST00000568443 RPL39LQ96EH5 51 aaKnown RBP14.52□□□□□ -0.09
CLN3-232ENST00000568443 hDV102S1A0JD36 115 aa14.5□□□□□ -0.09
CLN3-232ENST00000568443 CT83Q5H943 113 aa14.5□□□□□ -0.09
CLN3-232ENST00000568443 BORCS7Q96B45 105 aa14.5□□□□□ -0.09
CLN3-232ENST00000568443 SMIM7Q9BQ49 75 aa14.5□□□□□ -0.09
CLN3-232ENST00000568443 NCR2O95944 276 aa14.49□□□□□ -0.09
CLN3-232ENST00000568443 AMMECR1LQ6DCA0 310 aa14.49□□□□□ -0.09
CLN3-232ENST00000568443 AP5S1Q9NUS5 200 aa14.48□□□□□ -0.09
CLN3-232ENST00000568443 IGKV3OR2-268A0A0C4DH90 116 aa14.47□□□□□ -0.09
CLN3-232ENST00000568443 SDHAF1A6NFY7 115 aa14.47□□□□□ -0.09
CLN3-232ENST00000568443 NDUFS6O75380 124 aaKnown RBP14.47□□□□□ -0.09
CLN3-232ENST00000568443 APCSP02743 223 aa14.47□□□□□ -0.09
CLN3-232ENST00000568443 SDIM1Q6ZPB5 146 aa14.47□□□□□ -0.09
CLN3-232ENST00000568443 FAM210AQ96ND0 272 aa14.47□□□□□ -0.09
CLN3-232ENST00000568443 ZNF727A8MUV8 499 aa14.46□□□□□ -0.09
CLN3-232ENST00000568443 CNBPP62633 177 aaKnown RBP14.46□□□□□ -0.09
CLN3-232ENST00000568443 RNASEKQ6P5S7 137 aaKnown RBP14.46□□□□□ -0.09
CLN3-232ENST00000568443 LINC01551Q86U37 167 aa14.46□□□□□ -0.09
CLN3-232ENST00000568443 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.45□□□□□ -0.1
CLN3-232ENST00000568443 KRTAP29-1A8MX34 341 aaPredicted RBP14.45□□□□□ -0.1
CLN3-232ENST00000568443 H7C423 109 aa14.45□□□□□ -0.1
CLN3-232ENST00000568443 PMCHP20382 165 aa14.45□□□□□ -0.1
CLN3-232ENST00000568443 KRTAP10-4P60372 401 aaPredicted RBP14.45□□□□□ -0.1
CLN3-232ENST00000568443 TSKUQ8WUA8 353 aa14.45□□□□□ -0.1
CLN3-232ENST00000568443 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.44□□□□□ -0.1
CLN3-232ENST00000568443 A0A1B0GUT8 65 aa14.44□□□□□ -0.1
CLN3-232ENST00000568443 IGKV2-29A2NJV5 120 aaPredicted RBP14.44□□□□□ -0.1
CLN3-232ENST00000568443 GAGE12HA6NDE8 117 aa14.44□□□□□ -0.1
CLN3-232ENST00000568443 HIGD1CA8MV81 97 aa14.44□□□□□ -0.1
CLN3-232ENST00000568443 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.44□□□□□ -0.1
CLN3-232ENST00000568443 I3L3M4 83 aa14.43□□□□□ -0.1
CLN3-232ENST00000568443 SRP19P09132 144 aaKnown RBP14.43□□□□□ -0.1
CLN3-232ENST00000568443 CFAP161Q6P656 301 aa14.43□□□□□ -0.1
CLN3-232ENST00000568443 OSTCQ9NRP0 149 aa14.43□□□□□ -0.1
CLN3-232ENST00000568443 TRBV6-5A0A0K0K1A5 114 aa14.42□□□□□ -0.1
CLN3-232ENST00000568443 FAM231BA6NCW3 169 aa14.42□□□□□ -0.1
CLN3-232ENST00000568443 FGF6P10767 208 aa14.42□□□□□ -0.1
CLN3-232ENST00000568443 ST20Q9HBF5 79 aa14.42□□□□□ -0.1
CLN3-232ENST00000568443 IGHV3-64A0A075B6Q5 118 aa14.41□□□□□ -0.1
CLN3-232ENST00000568443 RPL37AP61513 92 aaKnown RBP14.41□□□□□ -0.1
CLN3-232ENST00000568443 DPH3Q96FX2 82 aa14.41□□□□□ -0.1
CLN3-232ENST00000568443 TMEM191AQ9H0A3 160 aa14.41□□□□□ -0.1
CLN3-232ENST00000568443 PANO1I0J062 215 aa14.4□□□□□ -0.1
CLN3-232ENST00000568443 SLPIP03973 132 aa14.4□□□□□ -0.1
CLN3-232ENST00000568443 CHCHD10Q8WYQ3 142 aaPredicted RBP14.4□□□□□ -0.1
CLN3-232ENST00000568443 GAS8-AS1O95177 125 aa14.39□□□□□ -0.11
CLN3-232ENST00000568443 ZNF25P17030 456 aaPredicted RBP14.39□□□□□ -0.11
CLN3-232ENST00000568443 TMEM101Q96IK0 257 aa14.39□□□□□ -0.11
CLN3-232ENST00000568443 BTF3L4Q96K17 158 aa14.39□□□□□ -0.11
CLN3-232ENST00000568443 RAB4AP20338 218 aa14.38□□□□□ -0.11
CLN3-232ENST00000568443 C15orf56Q8N910 161 aa14.38□□□□□ -0.11
CLN3-232ENST00000568443 TMEM241Q24JQ0 296 aa14.37□□□□□ -0.11
CLN3-232ENST00000568443 MRAP2Q96G30 205 aa14.37□□□□□ -0.11
CLN3-232ENST00000568443 RNF185Q96GF1 192 aa14.37□□□□□ -0.11
CLN3-232ENST00000568443 V9GYV3 84 aa14.37□□□□□ -0.11
CLN3-232ENST00000568443 A0A1B0GVG6 124 aa14.36□□□□□ -0.11
CLN3-232ENST00000568443 TSHBP01222 138 aa14.36□□□□□ -0.11
CLN3-232ENST00000568443 RIGQ13278 110 aa14.36□□□□□ -0.11
CLN3-232ENST00000568443 FAM74A3Q4VXF1 159 aa14.36□□□□□ -0.11
CLN3-232ENST00000568443 AMN1Q8IY45 258 aa14.36□□□□□ -0.11
CLN3-232ENST00000568443 OR5A1Q8NGJ0 315 aa14.36□□□□□ -0.11
CLN3-232ENST00000568443 TMEM242Q9NWH2 141 aa14.36□□□□□ -0.11
CLN3-232ENST00000568443 LRP1Q07954 4544 aaKnown RBP14.36□□□□□ -0.11
CLN3-232ENST00000568443 ESDP10768 282 aa14.35□□□□□ -0.11
CLN3-232ENST00000568443 POLR2KP53803 58 aaKnown RBP14.35□□□□□ -0.11
CLN3-232ENST00000568443 CIRBPQ14011 172 aaKnown RBP14.35□□□□□ -0.11
CLN3-232ENST00000568443 NUP35Q8NFH5 326 aa14.35□□□□□ -0.11
CLN3-232ENST00000568443 OXTP01178 125 aa14.34□□□□□ -0.11
CLN3-232ENST00000568443 RPS10P46783 165 aaKnown RBP14.34□□□□□ -0.11
CLN3-232ENST00000568443 HIGD2BQ4VC39 106 aa14.34□□□□□ -0.11
CLN3-232ENST00000568443 ISOC2Q96AB3 205 aa14.34□□□□□ -0.11
CLN3-232ENST00000568443 TRBV27A0A0K0K1C4 114 aa14.33□□□□□ -0.12
CLN3-232ENST00000568443 CHTF8P0CG12 524 aa14.32□□□□□ -0.12
CLN3-232ENST00000568443 XCL1P47992 114 aa14.32□□□□□ -0.12
CLN3-232ENST00000568443 RPL23P62829 140 aaKnown RBP14.32□□□□□ -0.12
CLN3-232ENST00000568443 NAT8BQ9UHF3 227 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms