RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 LINC00269Q8N2A0 174 aa12.31□□□□□ -0.44
CLN3-227ENST00000567495 TRAV26-2A0A0B4J265 109 aa12.3□□□□□ -0.44
CLN3-227ENST00000567495 UBE2L6O14933 153 aa12.3□□□□□ -0.44
CLN3-227ENST00000567495 NCR2O95944 276 aa12.3□□□□□ -0.44
CLN3-227ENST00000567495 AMTP48728 403 aa12.3□□□□□ -0.44
CLN3-227ENST00000567495 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.29□□□□□ -0.44
CLN3-227ENST00000567495 ISOC2Q96AB3 205 aa12.29□□□□□ -0.44
CLN3-227ENST00000567495 TMEM191AQ9H0A3 160 aa12.29□□□□□ -0.44
CLN3-227ENST00000567495 NAT8Q9UHE5 227 aa12.29□□□□□ -0.44
CLN3-227ENST00000567495 TRAV8-4A0A0B4J246 113 aa12.28□□□□□ -0.44
CLN3-227ENST00000567495 REG3AQ06141 175 aa12.28□□□□□ -0.44
CLN3-227ENST00000567495 V9GYV3 84 aa12.28□□□□□ -0.44
CLN3-227ENST00000567495 ABCA13Q86UQ4 5058 aa12.28□□□□□ -0.44
CLN3-227ENST00000567495 RPL23P62829 140 aaKnown RBP12.27□□□□□ -0.45
CLN3-227ENST00000567495 RIGQ13278 110 aa12.27□□□□□ -0.45
CLN3-227ENST00000567495 TRBV6-5A0A0K0K1A5 114 aa12.26□□□□□ -0.45
CLN3-227ENST00000567495 SDHAF1A6NFY7 115 aa12.26□□□□□ -0.45
CLN3-227ENST00000567495 C9JQL5 133 aa12.26□□□□□ -0.45
CLN3-227ENST00000567495 H7C423 109 aa12.26□□□□□ -0.45
CLN3-227ENST00000567495 ADIRFQ15847 76 aa12.26□□□□□ -0.45
CLN3-227ENST00000567495 CLPSL2Q6UWE3 100 aa12.26□□□□□ -0.45
CLN3-227ENST00000567495 C20orf203Q8NBC4 194 aa12.26□□□□□ -0.45
CLN3-227ENST00000567495 RPL39LQ96EH5 51 aaKnown RBP12.26□□□□□ -0.45
CLN3-227ENST00000567495 NAT8BQ9UHF3 227 aa12.26□□□□□ -0.45
CLN3-227ENST00000567495 HLA-DQA1P01909 254 aa12.25□□□□□ -0.45
CLN3-227ENST00000567495 Q6ZSA8 131 aa12.25□□□□□ -0.45
CLN3-227ENST00000567495 NUP35Q8NFH5 326 aa12.25□□□□□ -0.45
CLN3-227ENST00000567495 MRAP2Q96G30 205 aa12.25□□□□□ -0.45
CLN3-227ENST00000567495 IGLV4-60A0A075B6I1 120 aa12.24□□□□□ -0.45
CLN3-227ENST00000567495 USP17L23D6RBM5 183 aa12.24□□□□□ -0.45
CLN3-227ENST00000567495 I3L3M4 83 aa12.24□□□□□ -0.45
CLN3-227ENST00000567495 APCSP02743 223 aa12.24□□□□□ -0.45
CLN3-227ENST00000567495 ST20Q9HBF5 79 aa12.24□□□□□ -0.45
CLN3-227ENST00000567495 FAM30AQ9NZY2 134 aa12.24□□□□□ -0.45
CLN3-227ENST00000567495 FAM229AH3BQW9 127 aa12.23□□□□□ -0.45
CLN3-227ENST00000567495 PPP1R17O96001 155 aa12.23□□□□□ -0.45
CLN3-227ENST00000567495 PMCHP20382 165 aa12.23□□□□□ -0.45
CLN3-227ENST00000567495 SRSF3P84103 164 aaKnown RBP12.23□□□□□ -0.45
CLN3-227ENST00000567495 KRTAP26-1Q6PEX3 210 aa12.23□□□□□ -0.45
CLN3-227ENST00000567495 DEFB104AQ8WTQ1 72 aa12.23□□□□□ -0.45
CLN3-227ENST00000567495 RAB4AP20338 218 aa12.22□□□□□ -0.45
CLN3-227ENST00000567495 Q5VSD8 79 aa12.22□□□□□ -0.45
CLN3-227ENST00000567495 AMMECR1LQ6DCA0 310 aa12.22□□□□□ -0.45
CLN3-227ENST00000567495 DGAT2L7PQ6IED9 249 aa12.22□□□□□ -0.45
CLN3-227ENST00000567495 CLRN3Q8NCR9 226 aa12.22□□□□□ -0.45
CLN3-227ENST00000567495 A0A1B0GW15 77 aa12.21□□□□□ -0.45
CLN3-227ENST00000567495 SMIM27A0A1W2PRY6 76 aa12.21□□□□□ -0.45
CLN3-227ENST00000567495 RNF185Q96GF1 192 aa12.21□□□□□ -0.45
CLN3-227ENST00000567495 IGLV10-54A0A075B6I4 117 aa12.2□□□□□ -0.46
CLN3-227ENST00000567495 SMR3BP02814 79 aaPredicted RBP12.2□□□□□ -0.46
CLN3-227ENST00000567495 ZNF25P17030 456 aaPredicted RBP12.2□□□□□ -0.46
CLN3-227ENST00000567495 RAB14P61106 215 aa12.2□□□□□ -0.46
CLN3-227ENST00000567495 AMN1Q8IY45 258 aa12.2□□□□□ -0.46
CLN3-227ENST00000567495 TRBV27A0A0K0K1C4 114 aa12.19□□□□□ -0.46
CLN3-227ENST00000567495 RNASEKQ6P5S7 137 aaKnown RBP12.19□□□□□ -0.46
CLN3-227ENST00000567495 PRSS1P07477 247 aa12.18□□□□□ -0.46
CLN3-227ENST00000567495 FGF6P10767 208 aa12.18□□□□□ -0.46
CLN3-227ENST00000567495 POLR2KP53803 58 aaKnown RBP12.18□□□□□ -0.46
CLN3-227ENST00000567495 HAMPP81172 84 aa12.18□□□□□ -0.46
CLN3-227ENST00000567495 LINC01620Q4KN68 170 aa12.18□□□□□ -0.46
CLN3-227ENST00000567495 FAT1Q14517 4588 aa12.17□□□□□ -0.46
CLN3-227ENST00000567495 VCYO14598 125 aa12.17□□□□□ -0.46
CLN3-227ENST00000567495 S100A8P05109 93 aa12.17□□□□□ -0.46
CLN3-227ENST00000567495 BTF3L4Q96K17 158 aa12.17□□□□□ -0.46
CLN3-227ENST00000567495 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.16□□□□□ -0.46
CLN3-227ENST00000567495 IGKV2-29A2NJV5 120 aaPredicted RBP12.16□□□□□ -0.46
CLN3-227ENST00000567495 GAS8-AS1O95177 125 aa12.16□□□□□ -0.46
CLN3-227ENST00000567495 TSHBP01222 138 aa12.16□□□□□ -0.46
CLN3-227ENST00000567495 INAFM2P0DMQ5 153 aa12.16□□□□□ -0.46
CLN3-227ENST00000567495 ESDP10768 282 aa12.16□□□□□ -0.46
CLN3-227ENST00000567495 RPS10P46783 165 aaKnown RBP12.16□□□□□ -0.46
CLN3-227ENST00000567495 FAM104BQ5XKR9 115 aa12.16□□□□□ -0.46
CLN3-227ENST00000567495 TMEM101Q96IK0 257 aa12.16□□□□□ -0.46
CLN3-227ENST00000567495 CHAC1Q9BUX1 264 aa12.16□□□□□ -0.46
CLN3-227ENST00000567495 LINC00862A6NCI5 91 aa12.15□□□□□ -0.46
CLN3-227ENST00000567495 PPP1R2P9O14990 202 aa12.15□□□□□ -0.46
CLN3-227ENST00000567495 CFAP161Q6P656 301 aa12.15□□□□□ -0.46
CLN3-227ENST00000567495 TMEM242Q9NWH2 141 aa12.15□□□□□ -0.46
CLN3-227ENST00000567495 F8W036 122 aa12.14□□□□□ -0.47
CLN3-227ENST00000567495 CAMPP49913 170 aa12.14□□□□□ -0.47
CLN3-227ENST00000567495 SUMO2P61956 95 aaKnown RBP12.14□□□□□ -0.47
CLN3-227ENST00000567495 C9orf163Q8N9P6 203 aa12.14□□□□□ -0.47
CLN3-227ENST00000567495 OR5A1Q8NGJ0 315 aa12.14□□□□□ -0.47
CLN3-227ENST00000567495 AP5S1Q9NUS5 200 aa12.14□□□□□ -0.47
CLN3-227ENST00000567495 hDV102S1A0JD36 115 aa12.13□□□□□ -0.47
CLN3-227ENST00000567495 C7orf77A4D0Y5 90 aa12.13□□□□□ -0.47
CLN3-227ENST00000567495 FCER1GP30273 86 aa12.13□□□□□ -0.47
CLN3-227ENST00000567495 CNBPP62633 177 aaKnown RBP12.13□□□□□ -0.47
CLN3-227ENST00000567495 HBBP68871 147 aa12.13□□□□□ -0.47
CLN3-227ENST00000567495 SMAGPQ0VAQ4 97 aa12.13□□□□□ -0.47
CLN3-227ENST00000567495 MRPL52Q86TS9 123 aaKnown RBP12.13□□□□□ -0.47
CLN3-227ENST00000567495 NRACQ8N912 160 aa12.13□□□□□ -0.47
CLN3-227ENST00000567495 KIR2DL4Q99706 377 aa12.13□□□□□ -0.47
CLN3-227ENST00000567495 GAGE12HA6NDE8 117 aa12.12□□□□□ -0.47
CLN3-227ENST00000567495 PLA2G1BP04054 148 aaKnown RBP12.12□□□□□ -0.47
CLN3-227ENST00000567495 PNRC1Q12796 327 aaPredicted RBP12.12□□□□□ -0.47
CLN3-227ENST00000567495 SCXQ7RTU7 201 aa12.12□□□□□ -0.47
CLN3-227ENST00000567495 CHCHD10Q8WYQ3 142 aaPredicted RBP12.12□□□□□ -0.47
CLN3-227ENST00000567495 C20orf78Q9BR46 151 aa12.12□□□□□ -0.47
CLN3-227ENST00000567495 DNAH8Q96JB1 4490 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms