RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TRAPPC1Q9Y5R8 145 aa7.76□□□□□ -1.17
CLN3-226ENST00000567160 TNFRSF18Q9Y5U5 241 aa7.76□□□□□ -1.17
CLN3-226ENST00000567160 TRBV10-1A0A0K0K1A3 114 aa7.75□□□□□ -1.17
CLN3-226ENST00000567160 COLCA2A8K830 154 aa7.75□□□□□ -1.17
CLN3-226ENST00000567160 H3BNG1 76 aa7.75□□□□□ -1.17
CLN3-226ENST00000567160 MT-ND6P03923 174 aa7.75□□□□□ -1.17
CLN3-226ENST00000567160 SRIP30626 198 aa7.75□□□□□ -1.17
CLN3-226ENST00000567160 FABP9Q0Z7S8 132 aa7.75□□□□□ -1.17
CLN3-226ENST00000567160 MRPL23Q16540 153 aaKnown RBP7.75□□□□□ -1.17
CLN3-226ENST00000567160 NIT2Q9NQR4 276 aa7.75□□□□□ -1.17
CLN3-226ENST00000567160 TRBV7-3A0A075B6L6 115 aa7.74□□□□□ -1.17
CLN3-226ENST00000567160 IGHV3-38A0A0C4DH36 116 aa7.74□□□□□ -1.17
CLN3-226ENST00000567160 ORMDL3Q8N138 153 aa7.74□□□□□ -1.17
CLN3-226ENST00000567160 NRACQ8N912 160 aa7.74□□□□□ -1.17
CLN3-226ENST00000567160 DNAJC30Q96LL9 226 aa7.74□□□□□ -1.17
CLN3-226ENST00000567160 PRELID3AQ96N28 172 aa7.74□□□□□ -1.17
CLN3-226ENST00000567160 Q9H8V8 135 aa7.74□□□□□ -1.17
CLN3-226ENST00000567160 LINC00588Q9Y4M8 146 aa7.74□□□□□ -1.17
CLN3-226ENST00000567160 NPYP01303 97 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 PPBPP02775 128 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 LINC00694P0DN24 101 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 RAB5AP20339 215 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 UBE2D3P61077 147 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 UBE2D2P62837 147 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 NEGR1Q7Z3B1 354 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.73□□□□□ -1.17
CLN3-226ENST00000567160 ATP6V0E2Q8NHE4 81 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 DEFB104AQ8WTQ1 72 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 ST20Q9HBF5 79 aa7.73□□□□□ -1.17
CLN3-226ENST00000567160 TNFRSF6BO95407 300 aa7.72□□□□□ -1.17
CLN3-226ENST00000567160 PPP1R17O96001 155 aa7.72□□□□□ -1.17
CLN3-226ENST00000567160 SMR3BP02814 79 aaPredicted RBP7.72□□□□□ -1.17
CLN3-226ENST00000567160 TRBV6-5A0A0K0K1A5 114 aa7.71□□□□□ -1.18
CLN3-226ENST00000567160 SDHAF1A6NFY7 115 aa7.71□□□□□ -1.18
CLN3-226ENST00000567160 SUMO2P61956 95 aaKnown RBP7.71□□□□□ -1.18
CLN3-226ENST00000567160 SH2D6Q7Z4S9 175 aa7.71□□□□□ -1.18
CLN3-226ENST00000567160 LOC389332A0A1B0GUA5 103 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 KRTAP29-1A8MX34 341 aaPredicted RBP7.7□□□□□ -1.18
CLN3-226ENST00000567160 TRGC2P03986 189 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 PMCHP20382 165 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 ESRGQ1W209 222 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 LYPD5Q6UWN5 251 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 DAZ4Q86SG3 579 aaKnown RBP7.7□□□□□ -1.18
CLN3-226ENST00000567160 ALKBH7Q9BT30 221 aaPredicted RBP7.7□□□□□ -1.18
CLN3-226ENST00000567160 TMEM70Q9BUB7 260 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 KRTAP1-5Q9BYS1 174 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 DAZ3Q9NR90 486 aaKnown RBP7.7□□□□□ -1.18
CLN3-226ENST00000567160 PLA2G2DQ9UNK4 145 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 LAMTOR2Q9Y2Q5 125 aa7.7□□□□□ -1.18
CLN3-226ENST00000567160 HMCN2Q8NDA2 5059 aa7.69□□□□□ -1.18
CLN3-226ENST00000567160 PHOX2AO14813 284 aa7.69□□□□□ -1.18
CLN3-226ENST00000567160 POLR2KP53803 58 aaKnown RBP7.69□□□□□ -1.18
CLN3-226ENST00000567160 C20orf78Q9BR46 151 aa7.69□□□□□ -1.18
CLN3-226ENST00000567160 GTSF1LQ9H1H1 148 aa7.69□□□□□ -1.18
CLN3-226ENST00000567160 MAP1LC3AQ9H492 121 aa7.69□□□□□ -1.18
CLN3-226ENST00000567160 I3L3M4 83 aa7.68□□□□□ -1.18
CLN3-226ENST00000567160 COTL1Q14019 142 aa7.68□□□□□ -1.18
CLN3-226ENST00000567160 IQCJQ1A5X6 159 aa7.68□□□□□ -1.18
CLN3-226ENST00000567160 SMIM2Q9BVW6 85 aa7.68□□□□□ -1.18
CLN3-226ENST00000567160 TRBV27A0A0K0K1C4 114 aa7.67□□□□□ -1.18
CLN3-226ENST00000567160 VCYO14598 125 aa7.67□□□□□ -1.18
CLN3-226ENST00000567160 TSHBP01222 138 aa7.67□□□□□ -1.18
CLN3-226ENST00000567160 UPK3BQ9BT76 320 aa7.67□□□□□ -1.18
CLN3-226ENST00000567160 TCAPO15273 167 aa7.66□□□□□ -1.18
CLN3-226ENST00000567160 FCER1GP30273 86 aa7.66□□□□□ -1.18
CLN3-226ENST00000567160 FUSP35637 526 aaKnown RBP eCLIP7.66□□□□□ -1.18
CLN3-226ENST00000567160 AMTP48728 403 aa7.66□□□□□ -1.18
CLN3-226ENST00000567160 TIRAPP58753 221 aa7.66□□□□□ -1.18
CLN3-226ENST00000567160 KRTAP10-1P60331 282 aa7.66□□□□□ -1.18
CLN3-226ENST00000567160 RPL32P62910 135 aaKnown RBP7.66□□□□□ -1.18
CLN3-226ENST00000567160 LELP1Q5T871 98 aa7.66□□□□□ -1.18
CLN3-226ENST00000567160 NTM-AS1Q6ZSK4 140 aa7.66□□□□□ -1.18
CLN3-226ENST00000567160 TRBV6-8A0A0A6YYG3 113 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 TRAV8-6A0A0B4J262 113 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 IGHV1-24A0A0C4DH33 117 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 PRSS47A8MTI9 375 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 IFI27P40305 119 aaPredicted RBP7.65□□□□□ -1.18
CLN3-226ENST00000567160 TMEM97Q5BJF2 176 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 Q8N8P6 123 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 PRSS3P2Q8NHM4 247 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 C18orf32Q8TCD1 76 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 KIR2DL4Q99706 377 aa7.65□□□□□ -1.18
CLN3-226ENST00000567160 MRPS16Q9Y3D3 137 aaKnown RBP7.65□□□□□ -1.18
CLN3-226ENST00000567160 TRBV25-1A0A075B6N4 114 aa7.64□□□□□ -1.19
CLN3-226ENST00000567160 PLA2G1BP04054 148 aaKnown RBP7.64□□□□□ -1.19
CLN3-226ENST00000567160 GCSHP23434 173 aa7.64□□□□□ -1.19
CLN3-226ENST00000567160 WFDC10BQ8IUB3 73 aa7.64□□□□□ -1.19
CLN3-226ENST00000567160 CHCHD5Q9BSY4 110 aa7.64□□□□□ -1.19
CLN3-226ENST00000567160 TMEM243Q9BU79 118 aa7.64□□□□□ -1.19
CLN3-226ENST00000567160 NXT2Q9NPJ8 142 aaKnown RBP7.64□□□□□ -1.19
CLN3-226ENST00000567160 GAGE6Q13070 117 aa7.63□□□□□ -1.19
CLN3-226ENST00000567160 Q6ZRN7 208 aaPredicted RBP7.63□□□□□ -1.19
CLN3-226ENST00000567160 FA2HQ7L5A8 372 aa7.63□□□□□ -1.19
CLN3-226ENST00000567160 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.62□□□□□ -1.19
CLN3-226ENST00000567160 IGKV2-29A2NJV5 120 aaPredicted RBP7.62□□□□□ -1.19
CLN3-226ENST00000567160 C1orf196B1AJZ1 125 aa7.62□□□□□ -1.19
CLN3-226ENST00000567160 TMEM262E9PQX1 116 aa7.62□□□□□ -1.19
CLN3-226ENST00000567160 UBE2L6O14933 153 aa7.62□□□□□ -1.19
CLN3-226ENST00000567160 RNASEKQ6P5S7 137 aaKnown RBP7.62□□□□□ -1.19
CLN3-226ENST00000567160 CHCHD7Q9BUK0 85 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms