RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SMIM7Q9BQ49 75 aa13.52□□□□□ -0.25
CLN3-219ENST00000565778 IGLV10-54A0A075B6I4 117 aa13.51□□□□□ -0.25
CLN3-219ENST00000565778 A0A1B0GVG6 124 aa13.51□□□□□ -0.25
CLN3-219ENST00000565778 C20orf203Q8NBC4 194 aa13.51□□□□□ -0.25
CLN3-219ENST00000565778 FAM210AQ96ND0 272 aa13.51□□□□□ -0.25
CLN3-219ENST00000565778 IGLV4-60A0A075B6I1 120 aa13.5□□□□□ -0.25
CLN3-219ENST00000565778 ZNF727A8MUV8 499 aa13.5□□□□□ -0.25
CLN3-219ENST00000565778 BORCS7Q96B45 105 aa13.5□□□□□ -0.25
CLN3-219ENST00000565778 PRSS1P07477 247 aa13.49□□□□□ -0.25
CLN3-219ENST00000565778 KRTAP26-1Q6PEX3 210 aa13.49□□□□□ -0.25
CLN3-219ENST00000565778 TEX261Q6UWH6 196 aa13.49□□□□□ -0.25
CLN3-219ENST00000565778 TRAV8-4A0A0B4J246 113 aa13.48□□□□□ -0.25
CLN3-219ENST00000565778 NDUFS6O75380 124 aaKnown RBP13.48□□□□□ -0.25
CLN3-219ENST00000565778 PLA2G1BP04054 148 aaKnown RBP13.48□□□□□ -0.25
CLN3-219ENST00000565778 SRP19P09132 144 aaKnown RBP13.48□□□□□ -0.25
CLN3-219ENST00000565778 CT83Q5H943 113 aa13.48□□□□□ -0.25
CLN3-219ENST00000565778 DGAT2L7PQ6IED9 249 aa13.48□□□□□ -0.25
CLN3-219ENST00000565778 SCXQ7RTU7 201 aa13.48□□□□□ -0.25
CLN3-219ENST00000565778 LINC00528Q8N1L1 170 aa13.48□□□□□ -0.25
CLN3-219ENST00000565778 RPL39LQ96EH5 51 aaKnown RBP13.48□□□□□ -0.25
CLN3-219ENST00000565778 CHAC1Q9BUX1 264 aa13.48□□□□□ -0.25
CLN3-219ENST00000565778 VPS13BQ7Z7G8 4022 aa13.48□□□□□ -0.25
CLN3-219ENST00000565778 DNAH8Q96JB1 4490 aa13.48□□□□□ -0.25
CLN3-219ENST00000565778 SRRM2Q9UQ35 2752 aaKnown RBP13.47□□□□□ -0.25
CLN3-219ENST00000565778 LINC01551Q86U37 167 aa13.47□□□□□ -0.25
CLN3-219ENST00000565778 GFRA4Q9GZZ7 299 aa13.46□□□□□ -0.25
CLN3-219ENST00000565778 CLRN3Q8NCR9 226 aa13.45□□□□□ -0.26
CLN3-219ENST00000565778 TSKUQ8WUA8 353 aa13.45□□□□□ -0.26
CLN3-219ENST00000565778 OSTCQ9NRP0 149 aa13.45□□□□□ -0.26
CLN3-219ENST00000565778 HIGD1CA8MV81 97 aa13.44□□□□□ -0.26
CLN3-219ENST00000565778 NCR2O95944 276 aa13.44□□□□□ -0.26
CLN3-219ENST00000565778 PMCHP20382 165 aa13.44□□□□□ -0.26
CLN3-219ENST00000565778 CIRBP-AS1Q8TBR5 109 aa13.44□□□□□ -0.26
CLN3-219ENST00000565778 A0A1B0GUT8 65 aa13.43□□□□□ -0.26
CLN3-219ENST00000565778 SDHAF1A6NFY7 115 aa13.43□□□□□ -0.26
CLN3-219ENST00000565778 AMMECR1LQ6DCA0 310 aa13.43□□□□□ -0.26
CLN3-219ENST00000565778 IGKV3OR2-268A0A0C4DH90 116 aa13.42□□□□□ -0.26
CLN3-219ENST00000565778 TMEM241Q24JQ0 296 aa13.42□□□□□ -0.26
CLN3-219ENST00000565778 RNASEKQ6P5S7 137 aaKnown RBP13.42□□□□□ -0.26
CLN3-219ENST00000565778 C9orf163Q8N9P6 203 aa13.42□□□□□ -0.26
CLN3-219ENST00000565778 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.41□□□□□ -0.26
CLN3-219ENST00000565778 IGKV2-29A2NJV5 120 aaPredicted RBP13.41□□□□□ -0.26
CLN3-219ENST00000565778 FAM231BA6NCW3 169 aa13.41□□□□□ -0.26
CLN3-219ENST00000565778 APCSP02743 223 aa13.41□□□□□ -0.26
CLN3-219ENST00000565778 hDV102S1A0JD36 115 aa13.4□□□□□ -0.26
CLN3-219ENST00000565778 I3L3M4 83 aa13.4□□□□□ -0.26
CLN3-219ENST00000565778 FAM74A3Q4VXF1 159 aa13.4□□□□□ -0.26
CLN3-219ENST00000565778 TMEM191AQ9H0A3 160 aa13.4□□□□□ -0.26
CLN3-219ENST00000565778 ST20Q9HBF5 79 aa13.4□□□□□ -0.26
CLN3-219ENST00000565778 TRBV6-5A0A0K0K1A5 114 aa13.39□□□□□ -0.27
CLN3-219ENST00000565778 H7C423 109 aa13.39□□□□□ -0.27
CLN3-219ENST00000565778 GAS8-AS1O95177 125 aa13.39□□□□□ -0.27
CLN3-219ENST00000565778 AP5S1Q9NUS5 200 aa13.39□□□□□ -0.27
CLN3-219ENST00000565778 GAGE12HA6NDE8 117 aa13.38□□□□□ -0.27
CLN3-219ENST00000565778 FGF6P10767 208 aa13.38□□□□□ -0.27
CLN3-219ENST00000565778 RAB4AP20338 218 aa13.38□□□□□ -0.27
CLN3-219ENST00000565778 RIGQ13278 110 aa13.38□□□□□ -0.27
CLN3-219ENST00000565778 V9GYV3 84 aa13.38□□□□□ -0.27
CLN3-219ENST00000565778 RPL23P62829 140 aaKnown RBP13.37□□□□□ -0.27
CLN3-219ENST00000565778 PEA15Q15121 130 aa13.37□□□□□ -0.27
CLN3-219ENST00000565778 ISOC2Q96AB3 205 aa13.37□□□□□ -0.27
CLN3-219ENST00000565778 RNF185Q96GF1 192 aa13.37□□□□□ -0.27
CLN3-219ENST00000565778 ADIRFQ15847 76 aa13.36□□□□□ -0.27
CLN3-219ENST00000565778 SDIM1Q6ZPB5 146 aa13.36□□□□□ -0.27
CLN3-219ENST00000565778 AMN1Q8IY45 258 aa13.36□□□□□ -0.27
CLN3-219ENST00000565778 NUP35Q8NFH5 326 aa13.36□□□□□ -0.27
CLN3-219ENST00000565778 MRAP2Q96G30 205 aa13.36□□□□□ -0.27
CLN3-219ENST00000565778 BTF3L4Q96K17 158 aa13.36□□□□□ -0.27
CLN3-219ENST00000565778 FLG2Q5D862 2391 aaPredicted RBP13.35□□□□□ -0.27
CLN3-219ENST00000565778 C9JQL5 133 aa13.35□□□□□ -0.27
CLN3-219ENST00000565778 CFAP161Q6P656 301 aa13.35□□□□□ -0.27
CLN3-219ENST00000565778 TMEM101Q96IK0 257 aa13.35□□□□□ -0.27
CLN3-219ENST00000565778 NAT8Q9UHE5 227 aa13.35□□□□□ -0.27
CLN3-219ENST00000565778 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.34□□□□□ -0.27
CLN3-219ENST00000565778 CNBPP62633 177 aaKnown RBP13.34□□□□□ -0.27
CLN3-219ENST00000565778 SRSF3P84103 164 aaKnown RBP13.34□□□□□ -0.27
CLN3-219ENST00000565778 TMEM242Q9NWH2 141 aa13.34□□□□□ -0.27
CLN3-219ENST00000565778 NAT8BQ9UHF3 227 aa13.34□□□□□ -0.27
CLN3-219ENST00000565778 TSHBP01222 138 aa13.33□□□□□ -0.28
CLN3-219ENST00000565778 ZNF25P17030 456 aaPredicted RBP13.33□□□□□ -0.28
CLN3-219ENST00000565778 RPS10P46783 165 aaKnown RBP13.33□□□□□ -0.28
CLN3-219ENST00000565778 POLR2KP53803 58 aaKnown RBP13.33□□□□□ -0.28
CLN3-219ENST00000565778 CHCHD10Q8WYQ3 142 aaPredicted RBP13.33□□□□□ -0.28
CLN3-219ENST00000565778 DPH3Q96FX2 82 aa13.33□□□□□ -0.28
CLN3-219ENST00000565778 J3QL48 77 aa13.32□□□□□ -0.28
CLN3-219ENST00000565778 SLPIP03973 132 aa13.32□□□□□ -0.28
CLN3-219ENST00000565778 ESDP10768 282 aa13.32□□□□□ -0.28
CLN3-219ENST00000565778 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.32□□□□□ -0.28
CLN3-219ENST00000565778 IGHV3-64A0A075B6Q5 118 aa13.31□□□□□ -0.28
CLN3-219ENST00000565778 SMKR1H3BMG3 65 aa13.31□□□□□ -0.28
CLN3-219ENST00000565778 OR5A1Q8NGJ0 315 aa13.31□□□□□ -0.28
CLN3-219ENST00000565778 SMDT1Q9H4I9 107 aa13.31□□□□□ -0.28
CLN3-219ENST00000565778 TRBV27A0A0K0K1C4 114 aa13.3□□□□□ -0.28
CLN3-219ENST00000565778 VCYO14598 125 aa13.3□□□□□ -0.28
CLN3-219ENST00000565778 PPP1R17O96001 155 aa13.3□□□□□ -0.28
CLN3-219ENST00000565778 PANO1I0J062 215 aa13.29□□□□□ -0.28
CLN3-219ENST00000565778 C15orf56Q8N910 161 aa13.29□□□□□ -0.28
CLN3-219ENST00000565778 DMBT1Q9UGM3 2413 aaPredicted RBP13.28□□□□□ -0.28
CLN3-219ENST00000565778 SMIM27A0A1W2PRY6 76 aa13.28□□□□□ -0.28
CLN3-219ENST00000565778 FCER1GP30273 86 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms