RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 C20orf203Q8NBC4 194 aa11.49□□□□□ -0.57
NME3-205ENST00000563854 IGLV4-60A0A075B6I1 120 aa11.48□□□□□ -0.57
NME3-205ENST00000563854 GATCO43716 136 aaKnown RBP11.48□□□□□ -0.57
NME3-205ENST00000563854 SMIM15Q7Z3B0 74 aa11.48□□□□□ -0.57
NME3-205ENST00000563854 CIRBP-AS1Q8TBR5 109 aa11.48□□□□□ -0.57
NME3-205ENST00000563854 PGLYRP4Q96LB8 373 aa11.48□□□□□ -0.57
NME3-205ENST00000563854 KRTAP26-1Q6PEX3 210 aa11.47□□□□□ -0.57
NME3-205ENST00000563854 GATD1Q8NB37 220 aa11.47□□□□□ -0.57
NME3-205ENST00000563854 GTSF1Q8WW33 167 aa11.47□□□□□ -0.57
NME3-205ENST00000563854 CNFNQ9BYD5 112 aa11.47□□□□□ -0.57
NME3-205ENST00000563854 TMEM250H0YL14 139 aa11.46□□□□□ -0.57
NME3-205ENST00000563854 J3QL48 77 aa11.46□□□□□ -0.57
NME3-205ENST00000563854 RPL39LQ96EH5 51 aaKnown RBP11.46□□□□□ -0.57
NME3-205ENST00000563854 GFRA4Q9GZZ7 299 aa11.46□□□□□ -0.57
NME3-205ENST00000563854 IGKV3OR2-268A0A0C4DH90 116 aa11.45□□□□□ -0.58
NME3-205ENST00000563854 FOXA3P55318 350 aaPredicted RBP11.45□□□□□ -0.58
NME3-205ENST00000563854 EIF5A2Q9GZV4 153 aaKnown RBP11.45□□□□□ -0.58
NME3-205ENST00000563854 TRAV8-4A0A0B4J246 113 aa11.43□□□□□ -0.58
NME3-205ENST00000563854 A0A1B0GUV1 79 aa11.43□□□□□ -0.58
NME3-205ENST00000563854 hDV102S1A0JD36 115 aa11.43□□□□□ -0.58
NME3-205ENST00000563854 A8MWL6 223 aa11.43□□□□□ -0.58
NME3-205ENST00000563854 DGAT2L7PQ6IED9 249 aa11.43□□□□□ -0.58
NME3-205ENST00000563854 SMIM7Q9BQ49 75 aa11.43□□□□□ -0.58
NME3-205ENST00000563854 AMMECR1LQ6DCA0 310 aa11.42□□□□□ -0.58
NME3-205ENST00000563854 FAM231DQ6ZW35 169 aa11.42□□□□□ -0.58
NME3-205ENST00000563854 BORCS7Q96B45 105 aa11.42□□□□□ -0.58
NME3-205ENST00000563854 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.41□□□□□ -0.58
NME3-205ENST00000563854 IGKV2-29A2NJV5 120 aaPredicted RBP11.41□□□□□ -0.58
NME3-205ENST00000563854 RNASEKQ6P5S7 137 aaKnown RBP11.41□□□□□ -0.58
NME3-205ENST00000563854 C9orf163Q8N9P6 203 aa11.41□□□□□ -0.58
NME3-205ENST00000563854 CLRN3Q8NCR9 226 aa11.41□□□□□ -0.58
NME3-205ENST00000563854 LYPD6BQ8NI32 183 aa11.41□□□□□ -0.58
NME3-205ENST00000563854 APCSP02743 223 aa11.4□□□□□ -0.58
NME3-205ENST00000563854 AP5S1Q9NUS5 200 aa11.4□□□□□ -0.58
NME3-205ENST00000563854 GAGE12HA6NDE8 117 aa11.39□□□□□ -0.59
NME3-205ENST00000563854 SDHAF1A6NFY7 115 aa11.39□□□□□ -0.59
NME3-205ENST00000563854 ZNF727A8MUV8 499 aa11.39□□□□□ -0.59
NME3-205ENST00000563854 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.39□□□□□ -0.59
NME3-205ENST00000563854 CT83Q5H943 113 aa11.38□□□□□ -0.59
NME3-205ENST00000563854 TEX261Q6UWH6 196 aa11.38□□□□□ -0.59
NME3-205ENST00000563854 LINC01551Q86U37 167 aa11.38□□□□□ -0.59
NME3-205ENST00000563854 FAM210AQ96ND0 272 aa11.38□□□□□ -0.59
NME3-205ENST00000563854 HIGD1CA8MV81 97 aa11.37□□□□□ -0.59
NME3-205ENST00000563854 NCR2O95944 276 aa11.37□□□□□ -0.59
NME3-205ENST00000563854 PMCHP20382 165 aa11.37□□□□□ -0.59
NME3-205ENST00000563854 RPL37AP61513 92 aaKnown RBP11.37□□□□□ -0.59
NME3-205ENST00000563854 PANO1I0J062 215 aa11.36□□□□□ -0.59
NME3-205ENST00000563854 SRP19P09132 144 aaKnown RBP11.36□□□□□ -0.59
NME3-205ENST00000563854 TSKUQ8WUA8 353 aa11.36□□□□□ -0.59
NME3-205ENST00000563854 IGHV3-64A0A075B6Q5 118 aa11.35□□□□□ -0.59
NME3-205ENST00000563854 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.35□□□□□ -0.59
NME3-205ENST00000563854 A0A1B0GUT8 65 aa11.35□□□□□ -0.59
NME3-205ENST00000563854 A0A1B0GVG6 124 aa11.35□□□□□ -0.59
NME3-205ENST00000563854 I3L3M4 83 aa11.35□□□□□ -0.59
NME3-205ENST00000563854 GAS8-AS1O95177 125 aa11.35□□□□□ -0.59
NME3-205ENST00000563854 FGF6P10767 208 aa11.35□□□□□ -0.59
NME3-205ENST00000563854 KRTAP10-4P60372 401 aaPredicted RBP11.35□□□□□ -0.59
NME3-205ENST00000563854 CNBPP62633 177 aaKnown RBP11.35□□□□□ -0.59
NME3-205ENST00000563854 SDIM1Q6ZPB5 146 aa11.35□□□□□ -0.59
NME3-205ENST00000563854 TMEM242Q9NWH2 141 aa11.35□□□□□ -0.59
NME3-205ENST00000563854 HIGD2BQ4VC39 106 aa11.34□□□□□ -0.59
NME3-205ENST00000563854 CHCHD10Q8WYQ3 142 aaPredicted RBP11.34□□□□□ -0.59
NME3-205ENST00000563854 DPH3Q96FX2 82 aa11.34□□□□□ -0.59
NME3-205ENST00000563854 ST20Q9HBF5 79 aa11.34□□□□□ -0.59
NME3-205ENST00000563854 KRTAP29-1A8MX34 341 aaPredicted RBP11.33□□□□□ -0.6
NME3-205ENST00000563854 C15orf56Q8N910 161 aa11.33□□□□□ -0.6
NME3-205ENST00000563854 BTF3L4Q96K17 158 aa11.33□□□□□ -0.6
NME3-205ENST00000563854 OSTCQ9NRP0 149 aa11.33□□□□□ -0.6
NME3-205ENST00000563854 TRBV6-5A0A0K0K1A5 114 aa11.32□□□□□ -0.6
NME3-205ENST00000563854 H7C423 109 aa11.32□□□□□ -0.6
NME3-205ENST00000563854 SLPIP03973 132 aa11.32□□□□□ -0.6
NME3-205ENST00000563854 CHTF8P0CG12 524 aa11.32□□□□□ -0.6
NME3-205ENST00000563854 CFAP161Q6P656 301 aa11.32□□□□□ -0.6
NME3-205ENST00000563854 AMN1Q8IY45 258 aa11.32□□□□□ -0.6
NME3-205ENST00000563854 TMEM101Q96IK0 257 aa11.32□□□□□ -0.6
NME3-205ENST00000563854 TMEM191AQ9H0A3 160 aa11.32□□□□□ -0.6
NME3-205ENST00000563854 TSHBP01222 138 aa11.31□□□□□ -0.6
NME3-205ENST00000563854 RPS10P46783 165 aaKnown RBP11.31□□□□□ -0.6
NME3-205ENST00000563854 RNF185Q96GF1 192 aa11.31□□□□□ -0.6
NME3-205ENST00000563854 V9GYV3 84 aa11.31□□□□□ -0.6
NME3-205ENST00000563854 FAM231BA6NCW3 169 aa11.3□□□□□ -0.6
NME3-205ENST00000563854 SMKR1H3BMG3 65 aa11.3□□□□□ -0.6
NME3-205ENST00000563854 NDUFS6O75380 124 aaKnown RBP11.3□□□□□ -0.6
NME3-205ENST00000563854 ZNF25P17030 456 aaPredicted RBP11.3□□□□□ -0.6
NME3-205ENST00000563854 RAB4AP20338 218 aa11.3□□□□□ -0.6
NME3-205ENST00000563854 XCL1P47992 114 aa11.3□□□□□ -0.6
NME3-205ENST00000563854 RIGQ13278 110 aa11.3□□□□□ -0.6
NME3-205ENST00000563854 ADIRFQ15847 76 aa11.3□□□□□ -0.6
NME3-205ENST00000563854 OR5A1Q8NGJ0 315 aa11.3□□□□□ -0.6
NME3-205ENST00000563854 MRAP2Q96G30 205 aa11.3□□□□□ -0.6
NME3-205ENST00000563854 TMEM241Q24JQ0 296 aa11.29□□□□□ -0.6
NME3-205ENST00000563854 NUP35Q8NFH5 326 aa11.29□□□□□ -0.6
NME3-205ENST00000563854 ISOC2Q96AB3 205 aa11.29□□□□□ -0.6
NME3-205ENST00000563854 RPL23P62829 140 aaKnown RBP11.28□□□□□ -0.6
NME3-205ENST00000563854 CCL25O15444 150 aa11.27□□□□□ -0.61
NME3-205ENST00000563854 ESDP10768 282 aa11.27□□□□□ -0.61
NME3-205ENST00000563854 FCER1GP30273 86 aa11.27□□□□□ -0.61
NME3-205ENST00000563854 HNRNPA3P51991 378 aaKnown RBP11.27□□□□□ -0.61
NME3-205ENST00000563854 FOXI1Q12951 378 aa11.27□□□□□ -0.61
NME3-205ENST00000563854 A0A087WYN8 130 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms