RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 KRTAP10-3P60369 221 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 ZNF124Q15973 351 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 DGAT2L7PQ6IED9 249 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 SFTA2Q6UW10 78 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 LINC00612Q8N6U2 182 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 COPS9Q8WXC6 57 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 TMEM101Q96IK0 257 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 JPT2Q9H910 190 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 NOP10Q9NPE3 64 aaKnown RBP5.42□□□□□ -1.54
VPS39-204ENST00000561818 AGRNO00468 2067 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 TRBV25-1A0A075B6N4 114 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 TRAV26-1A0A087WT03 109 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 PRSS29PA6NIE9 313 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 UBE2L6O14933 153 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 CCL25O15444 150 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 GIG44P09565 113 aaPredicted RBP5.41□□□□□ -1.54
VPS39-204ENST00000561818 NMUP48645 174 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 LINC00469Q8N7U9 141 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 PLEKHB2Q96CS7 222 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 CST9LQ9H4G1 147 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 HHLA3Q9XRX5 114 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 FN1P02751 2386 aaKnown RBP5.41□□□□□ -1.54
VPS39-204ENST00000561818 WNK1Q9H4A3 2382 aa5.41□□□□□ -1.54
VPS39-204ENST00000561818 SETXQ7Z333 2677 aaKnown RBP5.41□□□□□ -1.54
VPS39-204ENST00000561818 HIVEP1P15822 2718 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 SORL1Q92673 2214 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 NF1P21359 2839 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 SETD2Q9BYW2 2564 aaPredicted RBP5.4□□□□□ -1.54
VPS39-204ENST00000561818 ANK3Q12955 4377 aaKnown RBP5.4□□□□□ -1.54
VPS39-204ENST00000561818 UBE2D3P61077 147 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 UBE2D2P62837 147 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 HERVK_113P63121 156 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 EGFEM1PQ0D2K5 195 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 TMEM243Q9BU79 118 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 SNHG12Q9BXW3 62 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 DKK2Q9UBU2 259 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 PRO0255Q9UI72 69 aa5.4□□□□□ -1.54
VPS39-204ENST00000561818 MYMXA0A1B0GTQ4 84 aa5.39□□□□□ -1.55
VPS39-204ENST00000561818 TINCRA0A1B0GVN0 87 aa5.39□□□□□ -1.55
VPS39-204ENST00000561818 SPART-AS1P0CW21 52 aa5.39□□□□□ -1.55
VPS39-204ENST00000561818 Q6ZTI0 123 aa5.39□□□□□ -1.55
VPS39-204ENST00000561818 Q6ZVH6 145 aa5.39□□□□□ -1.55
VPS39-204ENST00000561818 AMELXQ99217 191 aa5.39□□□□□ -1.55
VPS39-204ENST00000561818 F8P00451 2351 aa5.39□□□□□ -1.55
VPS39-204ENST00000561818 ZFHX3Q15911 3703 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 IGLV4-3A0A075B6K6 122 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 GAGE12BA1L429 117 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 PLAC8L1A1L4L8 177 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 GAGE7O76087 117 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 GAGE12FP0CL80 117 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 GAGE12GP0CL81 117 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 GAGE12IP0CL82 117 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 LGALS3P17931 250 aaKnown RBP5.38□□□□□ -1.55
VPS39-204ENST00000561818 TIRAPP58753 221 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 TMEM170BQ5T4T1 132 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 AMMECR1LQ6DCA0 310 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 FAM19A3Q7Z5A8 133 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 STPG4Q8N801 248 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 SLC25A29Q8N8R3 303 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 OR5A1Q8NGJ0 315 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 ZNRF2Q8NHG8 242 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 RNF183Q96D59 192 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 CHAC1Q9BUX1 264 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 GEMIN7Q9H840 131 aaKnown RBP5.38□□□□□ -1.55
VPS39-204ENST00000561818 UBE2D4Q9Y2X8 147 aa5.38□□□□□ -1.55
VPS39-204ENST00000561818 FLNBO75369 2602 aaKnown RBP5.37□□□□□ -1.55
VPS39-204ENST00000561818 IGHV3-73A0A0B4J1V6 119 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 H3BNG1 76 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 ATP5G1P05496 136 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 P0DMU3 169 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 FAM231AP0DMU4 169 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 FAM231CP0DMU5 169 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 FGF6P10767 208 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 DAD1P61803 113 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 MAJINQ3KP22 176 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 ANKRD39Q53RE8 183 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 LYRM7Q5U5X0 104 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 SCGB1D4Q6XE38 83 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 ORAOV1Q8WV07 137 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 ZNF479Q96JC4 524 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 CHCHD7Q9BUK0 85 aa5.37□□□□□ -1.55
VPS39-204ENST00000561818 C11orf68Q9H3H3 251 aaKnown RBP5.37□□□□□ -1.55
VPS39-204ENST00000561818 IGLV4-69A0A075B6H9 119 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 TMEM238C9JI98 176 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 LEPROTO15243 131 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 IGHV4-30-4P0DP06 118 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 RPL39P62891 51 aaKnown RBP5.36□□□□□ -1.55
VPS39-204ENST00000561818 GAGE1Q13065 139 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 BATFQ16520 125 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 KRTAP24-1Q3LI83 254 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 BVES-AS1Q5T3Y7 98 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 NEGR1Q7Z3B1 354 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 WFDC10AQ9H1F0 79 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 SPANXB1Q9NS25 103 aaPredicted RBP5.36□□□□□ -1.55
VPS39-204ENST00000561818 X6R8D5 127 aa5.36□□□□□ -1.55
VPS39-204ENST00000561818 IGLV5-45A0A087WSX0 123 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 TRBV6-8A0A0A6YYG3 113 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 TRAV8-6A0A0B4J262 113 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 A0A1B0GUV1 79 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 ZNF815PA8K554 130 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms