RNA–Protein interactions for RNA: ENST00000561637.5

NME3-202, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 1,014 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-202ENST00000561637 C20orf203Q8NBC4 194 aa16.42■□□□□ 0.22
NME3-202ENST00000561637 IGLV4-60A0A075B6I1 120 aa16.41■□□□□ 0.22
NME3-202ENST00000561637 IGLV10-54A0A075B6I4 117 aa16.41■□□□□ 0.22
NME3-202ENST00000561637 CEBPGP53567 150 aa16.41■□□□□ 0.22
NME3-202ENST00000561637 GATD1Q8NB37 220 aa16.41■□□□□ 0.22
NME3-202ENST00000561637 LYPD6BQ8NI32 183 aa16.41■□□□□ 0.22
NME3-202ENST00000561637 NIT2Q9NQR4 276 aa16.41■□□□□ 0.22
NME3-202ENST00000561637 PRSS1P07477 247 aa16.4■□□□□ 0.22
NME3-202ENST00000561637 BLOC1S1P78537 153 aa16.4■□□□□ 0.22
NME3-202ENST00000561637 WDR73Q6P4I2 378 aa16.4■□□□□ 0.22
NME3-202ENST00000561637 TMEM243Q9BU79 118 aa16.4■□□□□ 0.22
NME3-202ENST00000561637 RPL39LQ96EH5 51 aaKnown RBP16.39■□□□□ 0.21
NME3-202ENST00000561637 TMEM250H0YL14 139 aa16.38■□□□□ 0.21
NME3-202ENST00000561637 GATCO43716 136 aaKnown RBP16.37■□□□□ 0.21
NME3-202ENST00000561637 REG3AQ06141 175 aa16.37■□□□□ 0.21
NME3-202ENST00000561637 PGLYRP4Q96LB8 373 aa16.37■□□□□ 0.21
NME3-202ENST00000561637 PLA2G2DQ9UNK4 145 aa16.37■□□□□ 0.21
NME3-202ENST00000561637 C14orf177Q52M58 125 aa16.36■□□□□ 0.21
NME3-202ENST00000561637 CIRBP-AS1Q8TBR5 109 aa16.36■□□□□ 0.21
NME3-202ENST00000561637 CHAC1Q9BUX1 264 aa16.36■□□□□ 0.21
NME3-202ENST00000561637 AMTP48728 403 aa16.34■□□□□ 0.21
NME3-202ENST00000561637 GAS8-AS1O95177 125 aa16.33■□□□□ 0.2
NME3-202ENST00000561637 COTL1Q14019 142 aa16.33■□□□□ 0.2
NME3-202ENST00000561637 FAM231DQ6ZW35 169 aa16.33■□□□□ 0.2
NME3-202ENST00000561637 PKHD1L1Q86WI1 4243 aa16.33■□□□□ 0.2
NME3-202ENST00000561637 KRTAP10-4P60372 401 aaPredicted RBP16.32■□□□□ 0.2
NME3-202ENST00000561637 A0A1B0GUV1 79 aa16.31■□□□□ 0.2
NME3-202ENST00000561637 SMIM7Q9BQ49 75 aa16.31■□□□□ 0.2
NME3-202ENST00000561637 EIF5A2Q9GZV4 153 aaKnown RBP16.31■□□□□ 0.2
NME3-202ENST00000561637 PANO1I0J062 215 aa16.29■□□□□ 0.2
NME3-202ENST00000561637 SRP19P09132 144 aaKnown RBP16.29■□□□□ 0.2
NME3-202ENST00000561637 LINC01551Q86U37 167 aa16.29■□□□□ 0.2
NME3-202ENST00000561637 FAM210AQ96ND0 272 aa16.29■□□□□ 0.2
NME3-202ENST00000561637 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.28■□□□□ 0.2
NME3-202ENST00000561637 IGKV2-29A2NJV5 120 aaPredicted RBP16.28■□□□□ 0.2
NME3-202ENST00000561637 A8MWL6 223 aa16.28■□□□□ 0.2
NME3-202ENST00000561637 UBE2L6O14933 153 aa16.28■□□□□ 0.2
NME3-202ENST00000561637 IGKV3OR2-268A0A0C4DH90 116 aa16.27■□□□□ 0.2
NME3-202ENST00000561637 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP16.27■□□□□ 0.2
NME3-202ENST00000561637 OXTP01178 125 aa16.26■□□□□ 0.19
NME3-202ENST00000561637 C9orf163Q8N9P6 203 aa16.26■□□□□ 0.19
NME3-202ENST00000561637 SDHAF1A6NFY7 115 aa16.25■□□□□ 0.19
NME3-202ENST00000561637 ZNF727A8MUV8 499 aa16.25■□□□□ 0.19
NME3-202ENST00000561637 CT83Q5H943 113 aa16.25■□□□□ 0.19
NME3-202ENST00000561637 SMIM15Q7Z3B0 74 aa16.25■□□□□ 0.19
NME3-202ENST00000561637 TRAV8-4A0A0B4J246 113 aa16.24■□□□□ 0.19
NME3-202ENST00000561637 SLPIP03973 132 aa16.24■□□□□ 0.19
NME3-202ENST00000561637 hDV102S1A0JD36 115 aa16.23■□□□□ 0.19
NME3-202ENST00000561637 HIGD1CA8MV81 97 aa16.23■□□□□ 0.19
NME3-202ENST00000561637 C9JQL5 133 aa16.23■□□□□ 0.19
NME3-202ENST00000561637 DGAT2L7PQ6IED9 249 aa16.23■□□□□ 0.19
NME3-202ENST00000561637 RNF185Q96GF1 192 aa16.23■□□□□ 0.19
NME3-202ENST00000561637 FAM231BA6NCW3 169 aa16.22■□□□□ 0.19
NME3-202ENST00000561637 GAGE12HA6NDE8 117 aa16.22■□□□□ 0.19
NME3-202ENST00000561637 TSKUQ8WUA8 353 aa16.22■□□□□ 0.19
NME3-202ENST00000561637 APCSP02743 223 aa16.21■□□□□ 0.19
NME3-202ENST00000561637 RPS10P46783 165 aaKnown RBP16.21■□□□□ 0.19
NME3-202ENST00000561637 SDIM1Q6ZPB5 146 aa16.21■□□□□ 0.19
NME3-202ENST00000561637 OSTCQ9NRP0 149 aa16.21■□□□□ 0.19
NME3-202ENST00000561637 RNASEKQ6P5S7 137 aaKnown RBP16.2■□□□□ 0.18
NME3-202ENST00000561637 V9GYV3 84 aa16.2■□□□□ 0.18
NME3-202ENST00000561637 A0A1B0GUT8 65 aa16.19■□□□□ 0.18
NME3-202ENST00000561637 NCR2O95944 276 aa16.19■□□□□ 0.18
NME3-202ENST00000561637 FGF6P10767 208 aa16.19■□□□□ 0.18
NME3-202ENST00000561637 SRSF3P84103 164 aaKnown RBP16.19■□□□□ 0.18
NME3-202ENST00000561637 AMMECR1LQ6DCA0 310 aa16.19■□□□□ 0.18
NME3-202ENST00000561637 C15orf56Q8N910 161 aa16.19■□□□□ 0.18
NME3-202ENST00000561637 CLRN3Q8NCR9 226 aa16.19■□□□□ 0.18
NME3-202ENST00000561637 TMEM242Q9NWH2 141 aa16.19■□□□□ 0.18
NME3-202ENST00000561637 TRBV6-5A0A0K0K1A5 114 aa16.18■□□□□ 0.18
NME3-202ENST00000561637 SMKR1H3BMG3 65 aa16.18■□□□□ 0.18
NME3-202ENST00000561637 NDUFS6O75380 124 aaKnown RBP16.18■□□□□ 0.18
NME3-202ENST00000561637 TSHBP01222 138 aa16.18■□□□□ 0.18
NME3-202ENST00000561637 CNBPP62633 177 aaKnown RBP16.18■□□□□ 0.18
NME3-202ENST00000561637 AMN1Q8IY45 258 aa16.18■□□□□ 0.18
NME3-202ENST00000561637 PMCHP20382 165 aa16.17■□□□□ 0.18
NME3-202ENST00000561637 TEX261Q6UWH6 196 aa16.17■□□□□ 0.18
NME3-202ENST00000561637 ISOC2Q96AB3 205 aa16.17■□□□□ 0.18
NME3-202ENST00000561637 BORCS7Q96B45 105 aa16.17■□□□□ 0.18
NME3-202ENST00000561637 TMEM191AQ9H0A3 160 aa16.17■□□□□ 0.18
NME3-202ENST00000561637 I3L3M4 83 aa16.16■□□□□ 0.18
NME3-202ENST00000561637 CHTF8P0CG12 524 aa16.16■□□□□ 0.18
NME3-202ENST00000561637 RAB4AP20338 218 aa16.16■□□□□ 0.18
NME3-202ENST00000561637 RPL23P62829 140 aaKnown RBP16.16■□□□□ 0.18
NME3-202ENST00000561637 NUP35Q8NFH5 326 aa16.16■□□□□ 0.18
NME3-202ENST00000561637 CHCHD10Q8WYQ3 142 aaPredicted RBP16.16■□□□□ 0.18
NME3-202ENST00000561637 HIGD2BQ4VC39 106 aa16.15■□□□□ 0.18
NME3-202ENST00000561637 ST20Q9HBF5 79 aa16.15■□□□□ 0.18
NME3-202ENST00000561637 ESDP10768 282 aa16.14■□□□□ 0.17
NME3-202ENST00000561637 HNRNPA3P51991 378 aaKnown RBP16.14■□□□□ 0.17
NME3-202ENST00000561637 TMEM241Q24JQ0 296 aa16.13■□□□□ 0.17
NME3-202ENST00000561637 POLR2KP53803 58 aaKnown RBP16.12■□□□□ 0.17
NME3-202ENST00000561637 RPL37AP61513 92 aaKnown RBP16.12■□□□□ 0.17
NME3-202ENST00000561637 ADIRFQ15847 76 aa16.12■□□□□ 0.17
NME3-202ENST00000561637 AP5S1Q9NUS5 200 aa16.11■□□□□ 0.17
NME3-202ENST00000561637 H7C423 109 aa16.1■□□□□ 0.17
NME3-202ENST00000561637 FOXI1Q12951 378 aa16.1■□□□□ 0.17
NME3-202ENST00000561637 MRAP2Q96G30 205 aa16.1■□□□□ 0.17
NME3-202ENST00000561637 IGHV3-64A0A075B6Q5 118 aa16.09■□□□□ 0.17
NME3-202ENST00000561637 CIRBPQ14011 172 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms