RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 GFRA4Q9GZZ7 299 aa10.42□□□□□ -0.74
SNX1-213ENST00000561026 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.42□□□□□ -0.74
SNX1-213ENST00000561026 OXTP01178 125 aa10.41□□□□□ -0.74
SNX1-213ENST00000561026 RPL37AP61513 92 aaKnown RBP10.41□□□□□ -0.74
SNX1-213ENST00000561026 CNBPP62633 177 aaKnown RBP10.41□□□□□ -0.74
SNX1-213ENST00000561026 TWIST1Q15672 202 aa10.41□□□□□ -0.74
SNX1-213ENST00000561026 hDV102S1A0JD36 115 aa10.4□□□□□ -0.74
SNX1-213ENST00000561026 PANO1I0J062 215 aa10.4□□□□□ -0.74
SNX1-213ENST00000561026 UBE2L6O14933 153 aa10.4□□□□□ -0.74
SNX1-213ENST00000561026 COTL1Q14019 142 aa10.4□□□□□ -0.74
SNX1-213ENST00000561026 OCC1Q8TAD7 63 aa10.4□□□□□ -0.74
SNX1-213ENST00000561026 RNASE7Q9H1E1 156 aaKnown RBP10.4□□□□□ -0.74
SNX1-213ENST00000561026 RPP21Q9H633 154 aaKnown RBP10.4□□□□□ -0.74
SNX1-213ENST00000561026 K7EN84 100 aa10.39□□□□□ -0.75
SNX1-213ENST00000561026 AMTP48728 403 aa10.39□□□□□ -0.75
SNX1-213ENST00000561026 GATD1Q8NB37 220 aa10.39□□□□□ -0.75
SNX1-213ENST00000561026 TRAV26-2A0A0B4J265 109 aa10.38□□□□□ -0.75
SNX1-213ENST00000561026 SLPIP03973 132 aa10.38□□□□□ -0.75
SNX1-213ENST00000561026 CIRBPQ14011 172 aaKnown RBP10.38□□□□□ -0.75
SNX1-213ENST00000561026 GTSF1Q8WW33 167 aa10.38□□□□□ -0.75
SNX1-213ENST00000561026 SERTAD4-AS1Q5TG53 156 aa10.37□□□□□ -0.75
SNX1-213ENST00000561026 AP5S1Q9NUS5 200 aa10.37□□□□□ -0.75
SNX1-213ENST00000561026 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.36□□□□□ -0.75
SNX1-213ENST00000561026 HNRNPA3P51991 378 aaKnown RBP10.36□□□□□ -0.75
SNX1-213ENST00000561026 FAT3Q8TDW7 4589 aa10.35□□□□□ -0.75
SNX1-213ENST00000561026 IGHV3-64A0A075B6Q5 118 aa10.35□□□□□ -0.75
SNX1-213ENST00000561026 FOXA3P55318 350 aaPredicted RBP10.35□□□□□ -0.75
SNX1-213ENST00000561026 Q6ZNX1 250 aa10.35□□□□□ -0.75
SNX1-213ENST00000561026 RPL39LQ96EH5 51 aaKnown RBP10.35□□□□□ -0.75
SNX1-213ENST00000561026 TMEM250H0YL14 139 aa10.34□□□□□ -0.75
SNX1-213ENST00000561026 NCR2O95944 276 aa10.34□□□□□ -0.75
SNX1-213ENST00000561026 TEX261Q6UWH6 196 aa10.34□□□□□ -0.75
SNX1-213ENST00000561026 SMIM15Q7Z3B0 74 aa10.34□□□□□ -0.75
SNX1-213ENST00000561026 GAGE12HA6NDE8 117 aa10.33□□□□□ -0.76
SNX1-213ENST00000561026 AMMECR1LQ6DCA0 310 aa10.33□□□□□ -0.76
SNX1-213ENST00000561026 CFAP161Q6P656 301 aa10.33□□□□□ -0.76
SNX1-213ENST00000561026 C15orf56Q8N910 161 aa10.33□□□□□ -0.76
SNX1-213ENST00000561026 DPH3Q96FX2 82 aa10.33□□□□□ -0.76
SNX1-213ENST00000561026 HMCN2Q8NDA2 5059 aa10.33□□□□□ -0.76
SNX1-213ENST00000561026 IGKV3OR2-268A0A0C4DH90 116 aa10.32□□□□□ -0.76
SNX1-213ENST00000561026 A8MWL6 223 aa10.32□□□□□ -0.76
SNX1-213ENST00000561026 H7C423 109 aa10.32□□□□□ -0.76
SNX1-213ENST00000561026 GATCO43716 136 aaKnown RBP10.32□□□□□ -0.76
SNX1-213ENST00000561026 BLOC1S1P78537 153 aa10.32□□□□□ -0.76
SNX1-213ENST00000561026 FAM231DQ6ZW35 169 aa10.32□□□□□ -0.76
SNX1-213ENST00000561026 RNF185Q96GF1 192 aa10.32□□□□□ -0.76
SNX1-213ENST00000561026 A0A087WYN8 130 aa10.31□□□□□ -0.76
SNX1-213ENST00000561026 SDHAF1A6NFY7 115 aa10.31□□□□□ -0.76
SNX1-213ENST00000561026 CHTF8P0CG12 524 aa10.31□□□□□ -0.76
SNX1-213ENST00000561026 RNASEKQ6P5S7 137 aaKnown RBP10.31□□□□□ -0.76
SNX1-213ENST00000561026 ALKAL2Q6UX46 152 aa10.31□□□□□ -0.76
SNX1-213ENST00000561026 LYPD6BQ8NI32 183 aa10.31□□□□□ -0.76
SNX1-213ENST00000561026 CHCHD10Q8WYQ3 142 aaPredicted RBP10.31□□□□□ -0.76
SNX1-213ENST00000561026 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.3□□□□□ -0.76
SNX1-213ENST00000561026 IGKV2-29A2NJV5 120 aaPredicted RBP10.3□□□□□ -0.76
SNX1-213ENST00000561026 APCSP02743 223 aa10.3□□□□□ -0.76
SNX1-213ENST00000561026 FGF6P10767 208 aa10.3□□□□□ -0.76
SNX1-213ENST00000561026 SPACA4Q8TDM5 124 aa10.3□□□□□ -0.76
SNX1-213ENST00000561026 RPS10P46783 165 aaKnown RBP10.29□□□□□ -0.76
SNX1-213ENST00000561026 CT83Q5H943 113 aa10.29□□□□□ -0.76
SNX1-213ENST00000561026 AKAP14Q86UN6 197 aa10.29□□□□□ -0.76
SNX1-213ENST00000561026 PKHD1L1Q86WI1 4243 aa10.28□□□□□ -0.76
SNX1-213ENST00000561026 TRBV6-5A0A0K0K1A5 114 aa10.28□□□□□ -0.76
SNX1-213ENST00000561026 FAM231BA6NCW3 169 aa10.28□□□□□ -0.76
SNX1-213ENST00000561026 I3L3M4 83 aa10.28□□□□□ -0.76
SNX1-213ENST00000561026 HIGD2BQ4VC39 106 aa10.28□□□□□ -0.76
SNX1-213ENST00000561026 ZNF25P17030 456 aaPredicted RBP10.27□□□□□ -0.76
SNX1-213ENST00000561026 PMCHP20382 165 aa10.27□□□□□ -0.76
SNX1-213ENST00000561026 CEBPGP53567 150 aa10.27□□□□□ -0.76
SNX1-213ENST00000561026 COX6A2Q02221 97 aa10.27□□□□□ -0.76
SNX1-213ENST00000561026 PLAC8Q9NZF1 115 aa10.27□□□□□ -0.76
SNX1-213ENST00000561026 GAS8-AS1O95177 125 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 FOXI1Q12951 378 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 Q6ZRU5 148 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 BORCS7Q96B45 105 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 GVQW2A0A096LPI5 108 aaPredicted RBP10.26□□□□□ -0.77
SNX1-213ENST00000561026 NDUFS6O75380 124 aaKnown RBP10.26□□□□□ -0.77
SNX1-213ENST00000561026 ESDP10768 282 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 LINC01551Q86U37 167 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 OR5A1Q8NGJ0 315 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 PRSS3P2Q8NHM4 247 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 TSKUQ8WUA8 353 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 BTF3L4Q96K17 158 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 FAM210AQ96ND0 272 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 ST20Q9HBF5 79 aa10.26□□□□□ -0.77
SNX1-213ENST00000561026 A0A1B0GUT8 65 aa10.25□□□□□ -0.77
SNX1-213ENST00000561026 HIGD1CA8MV81 97 aa10.25□□□□□ -0.77
SNX1-213ENST00000561026 TSHBP01222 138 aa10.25□□□□□ -0.77
SNX1-213ENST00000561026 LCE2DQ5TA82 110 aaPredicted RBP10.25□□□□□ -0.77
SNX1-213ENST00000561026 TMEM101Q96IK0 257 aa10.25□□□□□ -0.77
SNX1-213ENST00000561026 SMIM7Q9BQ49 75 aa10.25□□□□□ -0.77
SNX1-213ENST00000561026 EIF5A2Q9GZV4 153 aaKnown RBP10.25□□□□□ -0.77
SNX1-213ENST00000561026 TMEM191AQ9H0A3 160 aa10.25□□□□□ -0.77
SNX1-213ENST00000561026 PLA2G2DQ9UNK4 145 aa10.25□□□□□ -0.77
SNX1-213ENST00000561026 LINC00959A0A1B0GUT2 108 aa10.24□□□□□ -0.77
SNX1-213ENST00000561026 MT1HL1P0DM35 61 aa10.24□□□□□ -0.77
SNX1-213ENST00000561026 XCL1P47992 114 aa10.24□□□□□ -0.77
SNX1-213ENST00000561026 TRBV27A0A0K0K1C4 114 aa10.23□□□□□ -0.77
SNX1-213ENST00000561026 RAB4AP20338 218 aa10.23□□□□□ -0.77
SNX1-213ENST00000561026 POLR2KP53803 58 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms