RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 GIG44P09565 113 aaPredicted RBP12.8□□□□□ -0.36
SNX1-208ENST00000559844 RPL39P62891 51 aaKnown RBP12.8□□□□□ -0.36
SNX1-208ENST00000559844 PMVKQ15126 192 aa12.8□□□□□ -0.36
SNX1-208ENST00000559844 TMEM97Q5BJF2 176 aa12.8□□□□□ -0.36
SNX1-208ENST00000559844 PAPPA-AS1Q5QFB9 102 aa12.8□□□□□ -0.36
SNX1-208ENST00000559844 PCP2Q8IVA1 136 aa12.79□□□□□ -0.36
SNX1-208ENST00000559844 C20orf203Q8NBC4 194 aa12.79□□□□□ -0.36
SNX1-208ENST00000559844 C16orf74Q96GX8 76 aa12.79□□□□□ -0.36
SNX1-208ENST00000559844 BVES-AS1Q5T3Y7 98 aa12.78□□□□□ -0.36
SNX1-208ENST00000559844 DEFB104AQ8WTQ1 72 aa12.78□□□□□ -0.36
SNX1-208ENST00000559844 IGKV2D-26A0A0A0MRZ7 120 aa12.78□□□□□ -0.36
SNX1-208ENST00000559844 TRGV1A0A0A0MS02 117 aa12.78□□□□□ -0.36
SNX1-208ENST00000559844 OR4C5Q8NGB2 326 aa12.78□□□□□ -0.36
SNX1-208ENST00000559844 P0DMU3 169 aa12.77□□□□□ -0.37
SNX1-208ENST00000559844 FAM231AP0DMU4 169 aa12.77□□□□□ -0.37
SNX1-208ENST00000559844 FAM231CP0DMU5 169 aa12.77□□□□□ -0.37
SNX1-208ENST00000559844 DAZ2Q13117 558 aaKnown RBP12.77□□□□□ -0.37
SNX1-208ENST00000559844 K7EIL1 84 aa12.76□□□□□ -0.37
SNX1-208ENST00000559844 IGHV4-30-4P0DP06 118 aa12.76□□□□□ -0.37
SNX1-208ENST00000559844 Q6ZSN1 163 aa12.76□□□□□ -0.37
SNX1-208ENST00000559844 CST9LQ9H4G1 147 aa12.76□□□□□ -0.37
SNX1-208ENST00000559844 CSNK1G2-AS1Q8NCQ2 148 aa12.76□□□□□ -0.37
SNX1-208ENST00000559844 TRAV4A0A0B4J268 109 aa12.75□□□□□ -0.37
SNX1-208ENST00000559844 HSD52Q0P140 79 aa12.75□□□□□ -0.37
SNX1-208ENST00000559844 HIGD1BQ9P298 99 aa12.75□□□□□ -0.37
SNX1-208ENST00000559844 RRN3P1Q2M238 152 aa12.74□□□□□ -0.37
SNX1-208ENST00000559844 CIDEAO60543 219 aa12.73□□□□□ -0.37
SNX1-208ENST00000559844 NPSP0C0P6 89 aa12.73□□□□□ -0.37
SNX1-208ENST00000559844 Q6ZTI0 123 aa12.73□□□□□ -0.37
SNX1-208ENST00000559844 PYGO1Q9Y3Y4 419 aa12.73□□□□□ -0.37
SNX1-208ENST00000559844 IGLV4-69A0A075B6H9 119 aa12.72□□□□□ -0.37
SNX1-208ENST00000559844 SEC11AP67812 179 aa12.72□□□□□ -0.37
SNX1-208ENST00000559844 DEFB121Q5J5C9 76 aa12.72□□□□□ -0.37
SNX1-208ENST00000559844 TRBV10-1A0A0K0K1A3 114 aa12.72□□□□□ -0.37
SNX1-208ENST00000559844 E9PLD3 99 aa12.72□□□□□ -0.37
SNX1-208ENST00000559844 OR11H2Q8NH07 326 aa12.72□□□□□ -0.37
SNX1-208ENST00000559844 OVOL2Q9BRP0 275 aa12.72□□□□□ -0.37
SNX1-208ENST00000559844 NOP10Q9NPE3 64 aaKnown RBP12.72□□□□□ -0.37
SNX1-208ENST00000559844 HERVK_113P61574 105 aa12.71□□□□□ -0.37
SNX1-208ENST00000559844 NACAE9PAV3 2078 aa12.71□□□□□ -0.38
SNX1-208ENST00000559844 PLAC8L1A1L4L8 177 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 ZNF25P17030 456 aaPredicted RBP12.7□□□□□ -0.38
SNX1-208ENST00000559844 CRYBA4P53673 196 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 COTL1Q14019 142 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 MRAPQ8TCY5 172 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 ZNF479Q96JC4 524 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 TRAV8-6A0A0B4J262 113 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 C11orf86A6NJI1 115 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 A8MZ25 164 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 K7EQD1 137 aa12.7□□□□□ -0.38
SNX1-208ENST00000559844 IGLV4-3A0A075B6K6 122 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 TRBV25-1A0A075B6N4 114 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 ORAOV1Q8WV07 137 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 TTTY13Q9BZ97 58 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 VCX2Q9H322 139 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 RPL36AP83881 106 aaKnown RBP12.69□□□□□ -0.38
SNX1-208ENST00000559844 NFE4Q86UQ8 179 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 RPL36ALQ969Q0 106 aaKnown RBP12.69□□□□□ -0.38
SNX1-208ENST00000559844 CHCHD7Q9BUK0 85 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 CHAC1Q9BUX1 264 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 SPANXA1Q9NS26 97 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 Q9UF83 564 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 COX11Q9Y6N1 276 aa12.69□□□□□ -0.38
SNX1-208ENST00000559844 MEGF8Q7Z7M0 2845 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 TRBV7-3A0A075B6L6 115 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 A6NDN8 102 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 MAPKAPK5-AS1Q8N8E1 139 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 ZNRF2Q8NHG8 242 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 PRADC1Q9BSG0 188 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 TRGV2A0A075B6R0 118 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 MYMXA0A1B0GTQ4 84 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 GAGE1Q13065 139 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 LINC00469Q8N7U9 141 aa12.67□□□□□ -0.38
SNX1-208ENST00000559844 PHLDA1Q8WV24 401 aaPredicted RBP12.67□□□□□ -0.38
SNX1-208ENST00000559844 OPRPNQ99935 248 aaPredicted RBP12.67□□□□□ -0.38
SNX1-208ENST00000559844 GAGE12BA1L429 117 aa12.66□□□□□ -0.38
SNX1-208ENST00000559844 GAGE7O76087 117 aa12.66□□□□□ -0.38
SNX1-208ENST00000559844 GAGE12FP0CL80 117 aa12.66□□□□□ -0.38
SNX1-208ENST00000559844 GAGE12GP0CL81 117 aa12.66□□□□□ -0.38
SNX1-208ENST00000559844 GAGE12IP0CL82 117 aa12.66□□□□□ -0.38
SNX1-208ENST00000559844 EMP1P54849 157 aa12.65□□□□□ -0.38
SNX1-208ENST00000559844 APOC4P55056 127 aa12.65□□□□□ -0.38
SNX1-208ENST00000559844 TAL2Q16559 108 aa12.65□□□□□ -0.38
SNX1-208ENST00000559844 DAZ4Q86SG3 579 aaKnown RBP12.65□□□□□ -0.38
SNX1-208ENST00000559844 AMELXQ99217 191 aa12.65□□□□□ -0.38
SNX1-208ENST00000559844 DAZ3Q9NR90 486 aaKnown RBP12.65□□□□□ -0.38
SNX1-208ENST00000559844 IGHV3-38A0A0C4DH36 116 aa12.65□□□□□ -0.38
SNX1-208ENST00000559844 TAX1BP3O14907 124 aa12.65□□□□□ -0.38
SNX1-208ENST00000559844 TMEM170BQ5T4T1 132 aa12.65□□□□□ -0.38
SNX1-208ENST00000559844 UBE2D4Q9Y2X8 147 aa12.65□□□□□ -0.38
SNX1-208ENST00000559844 SMIM9A6NGZ8 99 aa12.64□□□□□ -0.39
SNX1-208ENST00000559844 SLC25A29Q8N8R3 303 aa12.64□□□□□ -0.39
SNX1-208ENST00000559844 KIR2DL5BQ8NHK3 375 aa12.64□□□□□ -0.39
SNX1-208ENST00000559844 TRBV6-4A0A1B0GX49 114 aa12.63□□□□□ -0.39
SNX1-208ENST00000559844 TIMM21Q9BVV7 248 aa12.63□□□□□ -0.39
SNX1-208ENST00000559844 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.62□□□□□ -0.39
SNX1-208ENST00000559844 IGKV2-29A2NJV5 120 aaPredicted RBP12.62□□□□□ -0.39
SNX1-208ENST00000559844 UBE2D3P61077 147 aa12.62□□□□□ -0.39
SNX1-208ENST00000559844 UBE2D2P62837 147 aa12.62□□□□□ -0.39
SNX1-208ENST00000559844 TRGV4A0A0C4DH28 118 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms