RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 DCANP1Q8TF63 244 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 FAM19A4Q96LR4 140 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 SHANK2-AS3Q9BTD1 123 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 DPH3P1Q9H4G8 78 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 LINC00574Q9H8X3 128 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 RETNQ9HD89 108 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 LINC00527Q9UJ94 153 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 TP53TG1Q9Y2A0 90 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 SERP1Q9Y6X1 66 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 TNRC6BQ9UPQ9 1833 aaKnown RBP1.75□□□□□ -2.13
VPS13C-208ENST00000559119 ALPK2Q86TB3 2170 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 SMIM26A0A096LP01 95 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 TRGV5A0A0B4J1U4 118 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV5-51A0A0C4DH38 117 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 SPTY2D1-AS1A0A0U1RR47 76 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 hADV29S1A0JD25 119 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 M0R381 172 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 LEPROTO15243 131 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 SH2D1AO60880 128 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 SNRNP200O75643 2136 aaKnown RBP1.74□□□□□ -2.13
VPS13C-208ENST00000559119 NDUFA3O95167 84 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 PPP1R17O96001 155 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 OXTP01178 125 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 PFN2P35080 140 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 FXYD7P58549 80 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 FAM222AQ5U5X8 452 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 C16orf47Q6ZP98 133 aaPredicted RBP1.74□□□□□ -2.13
VPS13C-208ENST00000559119 WDR86Q86TI4 376 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 MDP1Q86V88 176 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 MED12LQ86YW9 2145 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 VKORC1L1Q8N0U8 176 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 C1orf158Q8N1D5 194 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 SLC25A45Q8N413 288 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 FAM216BQ8N7L0 139 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 C3orf56Q8N813 242 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 TMEM167AQ8TBQ9 72 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 KLF14Q8TD94 323 aaPredicted RBP1.74□□□□□ -2.13
VPS13C-208ENST00000559119 PATE1Q8WXA2 126 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 TMEM141Q96I45 108 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 SCGB3A1Q96QR1 104 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 AMELXQ99217 191 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 LAMTOR3Q9UHA4 124 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 KLK5Q9Y337 293 aaPredicted RBP1.74□□□□□ -2.13
VPS13C-208ENST00000559119 PCDH15Q96QU1 1955 aa1.74□□□□□ -2.13
VPS13C-208ENST00000559119 KIAA1549Q9HCM3 1950 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 IGLV1-50A0A075B6I6 118 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 TRBV7-1A0A0A6YYK4 115 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV3-15A0A0B4J1V0 119 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV3-43A0A0B4J1X8 118 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 TRBV10-3A0A0K0K1G6 114 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 H3BRN7 92 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 TIMM17BO60830 172 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 MRPL33O75394 65 aaKnown RBP1.73□□□□□ -2.13
VPS13C-208ENST00000559119 TLX1NBP0CAT3 122 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 INAFM2P0DMQ5 153 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 ZNF22P17026 224 aaPredicted RBP1.73□□□□□ -2.13
VPS13C-208ENST00000559119 RPL39P5Q59GN2 51 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 C1orf195Q5TG92 126 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 Q6JHZ5 121 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 Q6ZT83 130 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 LINC00336Q6ZUF6 198 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 TIMM17AQ99595 171 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 SLC50A1Q9BRV3 221 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 SMIM2Q9BVW6 85 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 C16orf95Q9H693 158 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 PROK2Q9HC23 129 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 ICOSQ9Y6W8 199 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 MYOFQ9NZM1 2061 aa1.73□□□□□ -2.13
VPS13C-208ENST00000559119 EML6Q6ZMW3 1958 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV3-74A0A0B4J1X5 117 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV1OR15-9A0A0B4J2B8 117 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 DEFB108AA8MXU0 73 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 IGLV2-23P01705 113 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV1-69P01742 117 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 SAA1P0DJI8 122 aaPredicted RBP1.72□□□□□ -2.13
VPS13C-208ENST00000559119 SAA2P0DJI9 122 aaPredicted RBP1.72□□□□□ -2.13
VPS13C-208ENST00000559119 LGALS3P17931 250 aaKnown RBP1.72□□□□□ -2.13
VPS13C-208ENST00000559119 LOXP28300 417 aaPredicted RBP1.72□□□□□ -2.13
VPS13C-208ENST00000559119 GFERP55789 205 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 ATP5EP56381 51 aaPredicted RBP1.72□□□□□ -2.13
VPS13C-208ENST00000559119 SYNJ2BPP57105 145 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 NPC2P61916 151 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 WT1-ASQ06250 92 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 ATP5EP2Q5VTU8 51 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 SFTA2Q6UW10 78 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 ZNF833PQ6ZTB9 187 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 MUSTN1Q8IVN3 82 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 EXOC3-AS1Q8N2X6 119 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 LINC00311Q8N616 119 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 SMCR5Q8TEV8 140 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 DSCR8Q96T75 97 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 TIMM21Q9BVV7 248 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 MRPL36Q9P0J6 103 aaKnown RBP1.72□□□□□ -2.13
VPS13C-208ENST00000559119 RPUSD1Q9UJJ7 312 aaKnown RBP1.72□□□□□ -2.13
VPS13C-208ENST00000559119 MYO7BQ6PIF6 2116 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 CEP192Q8TEP8 1941 aa1.72□□□□□ -2.13
VPS13C-208ENST00000559119 PTPRBP23467 1997 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 EXPH5Q8NEV8 1989 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 TRAV41A0A0B4J266 112 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 FAM236DA0A1B0GTK5 79 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms