RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 CRYGDP07320 174 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 SMIM17P0DL12 118 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 NTF3P20783 257 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 EVI2AP22794 236 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 CKS2P33552 79 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 ZNF80P51504 273 aaPredicted RBP5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 SLAQ13239 276 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 MRPL23Q16540 153 aaKnown RBP5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 ANXA2RQ3ZCQ2 193 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 FAM104BQ5XKR9 115 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 Q6ZQT7 251 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 Q6ZSA8 131 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 Q8N814 137 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 PRSS3P2Q8NHM4 247 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 DEFB104AQ8WTQ1 72 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 FAM19A4Q96LR4 140 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 ALKBH7Q9BT30 221 aaPredicted RBP5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 NAGKQ9UJ70 344 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 PLA2G2DQ9UNK4 145 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 PHLDA3Q9Y5J5 127 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 K7EP13 123 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 SNAI2O43623 268 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 PSCAO43653 123 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 SERF1AO75920 110 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 AMTP48728 403 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 WFDC2Q14508 124 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 KIAA1644Q3SXP7 199 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 PRR9Q5T870 116 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 FA2HQ7L5A8 372 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 ZFAND2AQ8N6M9 145 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 C18orf32Q8TCD1 76 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 SSBP4Q9BWG4 385 aaPredicted RBP5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 HSPB8Q9UJY1 196 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 HHLA3Q9XRX5 114 aa5.45□□□□□ -1.54
CCDC88C-214ENST00000557507 IGKV3D-20A0A0C4DH25 116 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 C20orf202A1L168 122 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 LINC00614P0C842 121 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 GYPEP15421 78 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 G0S2P27469 103 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 KRTAP10-4P60372 401 aaPredicted RBP5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 ZNF415Q09FC8 603 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 JOSD1Q15040 202 aaPredicted RBP5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 TDRG1Q3Y452 100 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 RNASEKQ6P5S7 137 aaKnown RBP5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 C10orf126Q8N4M7 172 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 MRAP2Q96G30 205 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 ZNF479Q96JC4 524 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 PRELID3AQ96N28 172 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 AP1S3Q96PC3 154 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 MAP1LC3AQ9H492 121 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 NIT2Q9NQR4 276 aa5.44□□□□□ -1.54
CCDC88C-214ENST00000557507 IGHV1OR15-1A0A075B7D0 117 aa5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 TRGV4A0A0C4DH28 118 aa5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 TSTD3H0UI37 97 aa5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 SCGB1D1O95968 90 aa5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 NIT1Q86X76 327 aa5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 DPH3P1Q9H4G8 78 aa5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 Q9HAA7 133 aa5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 NXT2Q9NPJ8 142 aaKnown RBP5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 AP5S1Q9NUS5 200 aa5.43□□□□□ -1.54
CCDC88C-214ENST00000557507 IGHV3-38A0A0C4DH36 116 aa5.42□□□□□ -1.54
CCDC88C-214ENST00000557507 LOC100131303A0A0U1RQF7 123 aa5.42□□□□□ -1.54
CCDC88C-214ENST00000557507 LINC01549A6NIU2 74 aa5.42□□□□□ -1.54
CCDC88C-214ENST00000557507 D6R8Y8 96 aa5.42□□□□□ -1.54
CCDC88C-214ENST00000557507 H3BVH4 76 aa5.42□□□□□ -1.54
CCDC88C-214ENST00000557507 K7EMI3 77 aa5.42□□□□□ -1.54
CCDC88C-214ENST00000557507 SCXQ7RTU7 201 aa5.42□□□□□ -1.54
CCDC88C-214ENST00000557507 OR10AG1Q8NH19 301 aa5.42□□□□□ -1.54
CCDC88C-214ENST00000557507 IFITM10A6NMD0 228 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 IBA57-AS1B1ANH7 110 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 M0R381 172 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 TCAPO15273 167 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 LEPROTL1O95214 131 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 OXTP01178 125 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 SSTP61278 116 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 PMCHL1Q16048 86 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 LINC01620Q4KN68 170 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 MRPL51Q4U2R6 128 aaKnown RBP5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 LINC01556Q5JQF7 62 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 PIK3CD-AS1Q5SR53 167 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 MUC21Q5SSG8 566 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 AMN1Q8IY45 258 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 MAP1LC3CQ9BXW4 147 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 RNF213Q63HN8 5207 aa5.41□□□□□ -1.54
CCDC88C-214ENST00000557507 H7C1H1 209 aa5.4□□□□□ -1.54
CCDC88C-214ENST00000557507 KRTDAPP60985 99 aa5.4□□□□□ -1.54
CCDC88C-214ENST00000557507 LRP2P98164 4655 aa5.4□□□□□ -1.54
CCDC88C-214ENST00000557507 C20orf78Q9BR46 151 aa5.4□□□□□ -1.54
CCDC88C-214ENST00000557507 SPXQ9BT56 116 aa5.4□□□□□ -1.54
CCDC88C-214ENST00000557507 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 HSBP1L1C9JCN9 74 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 LECT2O14960 151 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 TNFRSF6BO95407 300 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 IGHV3-30P01768 117 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 IGHV3-33P01772 117 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 IGHV3-30-3P0DP02 117 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 IGHV3-30-5P0DP03 117 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 TIRAPP58753 221 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 PKIAP61925 76 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 ORMDL2Q53FV1 153 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms