RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MORN3Q6PF18 240 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-229ENST00000557348 Q6ZUT4 128 aa9.29□□□□□ -0.92
SHMT2-229ENST00000557348 TOMM6Q96B49 74 aa9.29□□□□□ -0.92
SHMT2-229ENST00000557348 HERVK_113P61574 105 aa9.28□□□□□ -0.92
SHMT2-229ENST00000557348 TRPT1Q86TN4 253 aaKnown RBP9.28□□□□□ -0.92
SHMT2-229ENST00000557348 SPXQ9BT56 116 aa9.28□□□□□ -0.92
SHMT2-229ENST00000557348 SMIM2Q9BVW6 85 aa9.28□□□□□ -0.92
SHMT2-229ENST00000557348 A8MWV9 139 aa9.27□□□□□ -0.93
SHMT2-229ENST00000557348 SUMO2P61956 95 aaKnown RBP9.27□□□□□ -0.93
SHMT2-229ENST00000557348 GAGE5Q13069 117 aa9.27□□□□□ -0.93
SHMT2-229ENST00000557348 GAGE6Q13070 117 aa9.27□□□□□ -0.93
SHMT2-229ENST00000557348 BEAN1Q3B7T3 259 aa9.27□□□□□ -0.93
SHMT2-229ENST00000557348 MAPKAPK5-AS1Q8N8E1 139 aa9.27□□□□□ -0.93
SHMT2-229ENST00000557348 NEXN-AS1Q8NBZ9 246 aa9.27□□□□□ -0.93
SHMT2-229ENST00000557348 PGPEP1Q9NXJ5 209 aa9.27□□□□□ -0.93
SHMT2-229ENST00000557348 KIF25-AS1Q9Y6Z4 181 aa9.27□□□□□ -0.93
SHMT2-229ENST00000557348 ZFHX3Q15911 3703 aa9.26□□□□□ -0.93
SHMT2-229ENST00000557348 RBMY1BA6NDE4 496 aaKnown RBP9.26□□□□□ -0.93
SHMT2-229ENST00000557348 RBMY1EA6NEQ0 496 aaKnown RBP9.26□□□□□ -0.93
SHMT2-229ENST00000557348 RBMY1DP0C7P1 496 aaKnown RBP9.26□□□□□ -0.93
SHMT2-229ENST00000557348 ZFAND6Q6FIF0 208 aa9.26□□□□□ -0.93
SHMT2-229ENST00000557348 LINC00482Q8N8I6 264 aa9.26□□□□□ -0.93
SHMT2-229ENST00000557348 MDFICQ9P1T7 246 aa9.26□□□□□ -0.93
SHMT2-229ENST00000557348 MRPL23Q16540 153 aaKnown RBP9.26□□□□□ -0.93
SHMT2-229ENST00000557348 RASL10AQ92737 203 aa9.26□□□□□ -0.93
SHMT2-229ENST00000557348 LINC01587Q99440 93 aa9.26□□□□□ -0.93
SHMT2-229ENST00000557348 NF1P21359 2839 aa9.26□□□□□ -0.93
SHMT2-229ENST00000557348 TRAV26-2A0A0B4J265 109 aa9.25□□□□□ -0.93
SHMT2-229ENST00000557348 M0R2P5 195 aa9.25□□□□□ -0.93
SHMT2-229ENST00000557348 FXYD7P58549 80 aa9.25□□□□□ -0.93
SHMT2-229ENST00000557348 ZNF876PQ49A33 203 aa9.25□□□□□ -0.93
SHMT2-229ENST00000557348 HIST2H2BDQ6DRA6 164 aa9.25□□□□□ -0.93
SHMT2-229ENST00000557348 EDA2RQ9HAV5 297 aa9.25□□□□□ -0.93
SHMT2-229ENST00000557348 TRBV6-5A0A0K0K1A5 114 aa9.24□□□□□ -0.93
SHMT2-229ENST00000557348 GATA1P15976 413 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-229ENST00000557348 LINC00315P59091 139 aa9.24□□□□□ -0.93
SHMT2-229ENST00000557348 C9orf66Q5T8R8 295 aa9.24□□□□□ -0.93
SHMT2-229ENST00000557348 SCGB3A1Q96QR1 104 aa9.24□□□□□ -0.93
SHMT2-229ENST00000557348 NIPBLQ6KC79 2804 aaeCLIP9.23□□□□□ -0.93
SHMT2-229ENST00000557348 NSD1Q96L73 2696 aaPredicted RBP9.23□□□□□ -0.93
SHMT2-229ENST00000557348 F5H697 171 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 RHODO00212 210 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 GAS8-AS1O95177 125 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 RBMY1A1P0DJD3 496 aaKnown RBP9.23□□□□□ -0.93
SHMT2-229ENST00000557348 RBMY1CP0DJD4 496 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 KRTAP10-3P60369 221 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 RBMY1FQ15415 496 aaKnown RBP9.23□□□□□ -0.93
SHMT2-229ENST00000557348 SCGB1C2P0DMR2 95 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 SMCPP49901 116 aaPredicted RBP9.23□□□□□ -0.93
SHMT2-229ENST00000557348 SRSF9Q13242 221 aaKnown RBP eCLIP9.23□□□□□ -0.93
SHMT2-229ENST00000557348 ZNF56Q15929 161 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 SUMO4Q6EEV6 95 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 TMEM141Q96I45 108 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 TTTY13Q9BZ97 58 aa9.23□□□□□ -0.93
SHMT2-229ENST00000557348 VCYO14598 125 aa9.22□□□□□ -0.93
SHMT2-229ENST00000557348 CRYGDP07320 174 aa9.22□□□□□ -0.93
SHMT2-229ENST00000557348 SCGB1D4Q6XE38 83 aa9.22□□□□□ -0.93
SHMT2-229ENST00000557348 C10orf126Q8N4M7 172 aa9.22□□□□□ -0.93
SHMT2-229ENST00000557348 KIR2DL4Q99706 377 aa9.22□□□□□ -0.93
SHMT2-229ENST00000557348 CITED1Q99966 193 aa9.22□□□□□ -0.93
SHMT2-229ENST00000557348 ANAPC13Q9BS18 74 aa9.22□□□□□ -0.93
SHMT2-229ENST00000557348 ZNF815PA8K554 130 aa9.21□□□□□ -0.93
SHMT2-229ENST00000557348 P0DMU3 169 aa9.21□□□□□ -0.93
SHMT2-229ENST00000557348 FAM231AP0DMU4 169 aa9.21□□□□□ -0.93
SHMT2-229ENST00000557348 FAM231CP0DMU5 169 aa9.21□□□□□ -0.93
SHMT2-229ENST00000557348 FAM74A4Q5TZK3 123 aa9.21□□□□□ -0.93
SHMT2-229ENST00000557348 PRADC1Q9BSG0 188 aa9.21□□□□□ -0.93
SHMT2-229ENST00000557348 A0A087WWL8 130 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 SPRY2O43597 315 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 HTN1P15515 57 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 TMEM263Q8WUH6 116 aaKnown RBP9.2□□□□□ -0.94
SHMT2-229ENST00000557348 RPL39LQ96EH5 51 aaKnown RBP9.2□□□□□ -0.94
SHMT2-229ENST00000557348 C19orf73Q9NVV2 129 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 XCL2Q9UBD3 114 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 TRBV27A0A0K0K1C4 114 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 C11orf86A6NJI1 115 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 PSMB2P49721 201 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 POLR2KP53803 58 aaKnown RBP9.2□□□□□ -0.94
SHMT2-229ENST00000557348 XGP55808 180 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 NFE4Q86UQ8 179 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.2□□□□□ -0.94
SHMT2-229ENST00000557348 SLC25A29Q8N8R3 303 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 C11orf72Q8NBR9 251 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 JPT2Q9H910 190 aa9.2□□□□□ -0.94
SHMT2-229ENST00000557348 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.19□□□□□ -0.94
SHMT2-229ENST00000557348 A0A0B4J2C4 111 aa9.19□□□□□ -0.94
SHMT2-229ENST00000557348 M0QY20 66 aa9.19□□□□□ -0.94
SHMT2-229ENST00000557348 ZFP2Q6ZN57 461 aa9.19□□□□□ -0.94
SHMT2-229ENST00000557348 BAALCQ8WXS3 180 aa9.19□□□□□ -0.94
SHMT2-229ENST00000557348 TIMM17AQ99595 171 aa9.19□□□□□ -0.94
SHMT2-229ENST00000557348 PRO1854Q9UHT4 67 aa9.19□□□□□ -0.94
SHMT2-229ENST00000557348 LOC107984156A0A0G2JMH3 177 aa9.18□□□□□ -0.94
SHMT2-229ENST00000557348 SDHAF1A6NFY7 115 aa9.18□□□□□ -0.94
SHMT2-229ENST00000557348 MT-ATP8P03928 68 aa9.18□□□□□ -0.94
SHMT2-229ENST00000557348 RPL13AP40429 203 aaKnown RBP9.18□□□□□ -0.94
SHMT2-229ENST00000557348 RHOHQ15669 191 aa9.18□□□□□ -0.94
SHMT2-229ENST00000557348 ARL17AQ8IVW1 177 aa9.18□□□□□ -0.94
SHMT2-229ENST00000557348 C1orf158Q8N1D5 194 aa9.18□□□□□ -0.94
SHMT2-229ENST00000557348 C16orf74Q96GX8 76 aa9.18□□□□□ -0.94
SHMT2-229ENST00000557348 SPANXCQ9NY87 97 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms