RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 USP24Q9UPU5 2620 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 INSP01308 110 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 TSPEAR-AS2P59090 65 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 TRGV4A0A0C4DH28 118 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 M0QY20 66 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 IGLV1-40P01703 118 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 ELANEP08246 267 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 GATA3P23771 443 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 K7EMT4 169 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 C20orf203Q8NBC4 194 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 ZMAT4Q9H898 229 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 KLLNB2CW77 178 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 CRYGDP07320 174 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 CIRBPQ14011 172 aaKnown RBP8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 CHCHD5Q9BSY4 110 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 A0A0J9YY99 117 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 M0R2P5 195 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 HTN3P15516 51 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 OR13C6PQ8NH95 151 aa8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 NOP10Q9NPE3 64 aaKnown RBP8.99□□□□□ -0.97
CCDC88C-211ENST00000556726 BSNQ9UPA5 3926 aa8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 IGHV4-4A0A075B6R2 117 aa8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 RNASE1P07998 156 aaKnown RBP8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 POLR2KP53803 58 aaKnown RBP8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 PRIMA1Q86XR5 153 aa8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 WFDC10AQ9H1F0 79 aa8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 GCN1Q92616 2671 aaKnown RBP8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 TRBV7-3A0A075B6L6 115 aa8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 TCL1BO95988 128 aa8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 RPL13AP40429 203 aaKnown RBP8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 Q6ZUT4 128 aa8.98□□□□□ -0.97
CCDC88C-211ENST00000556726 TSHBP01222 138 aa8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 CLPSL2Q6UWE3 100 aa8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 NDUFA11Q86Y39 141 aa8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 NTN5Q8WTR8 489 aaPredicted RBP8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 HELZ2Q9BYK8 2649 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 RHODO00212 210 aa8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 IGHV3-30-3P0DP02 117 aa8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 RPL36AP83881 106 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 Q6ZSV7 163 aa8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 RPL36ALQ969Q0 106 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-211ENST00000556726 PF4P02776 101 aa8.96□□□□□ -0.97
CCDC88C-211ENST00000556726 SPANXB1Q9NS25 103 aaPredicted RBP8.96□□□□□ -0.97
CCDC88C-211ENST00000556726 SLC25A20O43772 301 aa8.96□□□□□ -0.98
CCDC88C-211ENST00000556726 CFC1BP0CG36 223 aa8.96□□□□□ -0.98
CCDC88C-211ENST00000556726 CFC1P0CG37 223 aa8.96□□□□□ -0.98
CCDC88C-211ENST00000556726 GAGE6Q13070 117 aa8.96□□□□□ -0.98
CCDC88C-211ENST00000556726 WFDC11Q8NEX6 87 aa8.96□□□□□ -0.98
CCDC88C-211ENST00000556726 TIMM17AQ99595 171 aa8.96□□□□□ -0.98
CCDC88C-211ENST00000556726 IGLV4-3A0A075B6K6 122 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 NDUFA7O95182 113 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 ZNF22P17026 224 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 C2orf82Q6UX34 121 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 C10orf126Q8N4M7 172 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 IGIPA6NJ69 53 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 H3BMM0 161 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 ESM1Q9NQ30 184 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 IGLV4-69A0A075B6H9 119 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 CRIP2P52943 208 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 LINC00467Q9BRT7 94 aa8.95□□□□□ -0.98
CCDC88C-211ENST00000556726 CKS1BP61024 79 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 MED14OSP0DP75 135 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 RHOHQ15669 191 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 MORN3Q6PF18 240 aaPredicted RBP8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 TMEM101Q96IK0 257 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 Q9H8V8 135 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 MAP6D1Q9H9H5 199 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 IGHV4-31P0DP07 118 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 DEFB113Q30KQ7 82 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 CLEC2BQ92478 149 aa8.94□□□□□ -0.98
CCDC88C-211ENST00000556726 CCL24O00175 119 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 LEPROTO15243 131 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 SNCGO76070 127 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 PFN2P35080 140 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 Q6ZTI0 123 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 ANKRD29Q8N6D5 301 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 ZNF702PQ9H963 129 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 ATRQ13535 2644 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 TRBV27A0A0K0K1C4 114 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 LINC00158P58513 81 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 Q6ZSN1 163 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 CITED2Q99967 270 aaPredicted RBP8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 CDKN2A-AS1Q9UH64 79 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 RBMY1A1P0DJD3 496 aaKnown RBP8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 RBMY1CP0DJD4 496 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 LINC00315P59091 139 aa8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 RBMY1FQ15415 496 aaKnown RBP8.93□□□□□ -0.98
CCDC88C-211ENST00000556726 LGALS9O00182 355 aa8.92□□□□□ -0.98
CCDC88C-211ENST00000556726 FOXI1Q12951 378 aa8.92□□□□□ -0.98
CCDC88C-211ENST00000556726 BBC3Q96PG8 261 aaPredicted RBP8.92□□□□□ -0.98
CCDC88C-211ENST00000556726 KIF25-AS1Q9Y6Z4 181 aa8.92□□□□□ -0.98
CCDC88C-211ENST00000556726 CSMD2Q7Z408 3487 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 J3QLI3 93 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 DEFB4AO15263 64 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 SLC25A29Q8N8R3 303 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 PPDPFLQ8WWR9 84 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 MXRA5Q9NR99 2828 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 A0A0J9YXY3 114 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 PLA2G2AP14555 144 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms