RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 SMIM15Q7Z3B0 74 aa4.43□□□□□ -1.7
LINC00643-203ENST00000555518 HIST3H2BBQ8N257 126 aa4.43□□□□□ -1.7
LINC00643-203ENST00000555518 RPL39LQ96EH5 51 aaKnown RBP4.43□□□□□ -1.7
LINC00643-203ENST00000555518 TM2D3Q9BRN9 247 aa4.43□□□□□ -1.7
LINC00643-203ENST00000555518 Q9UF83 564 aa4.43□□□□□ -1.7
LINC00643-203ENST00000555518 LAMTOR2Q9Y2Q5 125 aa4.43□□□□□ -1.7
LINC00643-203ENST00000555518 STAB2Q8WWQ8 2551 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 A0A096LNJ9 63 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 IGHV3-73A0A0B4J1V6 119 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 TRBV6-5A0A0K0K1A5 114 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 LYRM9A8MSI8 78 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 DEFB4AO15263 64 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 GAGE7O76087 117 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 IGHV3-53P01767 116 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 GAGE12FP0CL80 117 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 GAGE12GP0CL81 117 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 GAGE12IP0CL82 117 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 P0DMU3 169 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 FAM231AP0DMU4 169 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 FAM231CP0DMU5 169 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 EMP1P54849 157 aa4.42□□□□□ -1.7
LINC00643-203ENST00000555518 RPL32P62910 135 aaKnown RBP4.42□□□□□ -1.7
LINC00643-203ENST00000555518 C11orf68Q9H3H3 251 aaKnown RBP4.42□□□□□ -1.7
LINC00643-203ENST00000555518 S100A6P06703 90 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 SMIM17P0DL12 118 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 LINC00694P0DN24 101 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 IFI27P40305 119 aaPredicted RBP4.41□□□□□ -1.7
LINC00643-203ENST00000555518 POLR2KP53803 58 aaKnown RBP4.41□□□□□ -1.7
LINC00643-203ENST00000555518 KRTAP10-5P60370 271 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 ZNF56Q15929 161 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 NIT1Q86X76 327 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 BAGE3Q86Y29 109 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 NEXN-AS1Q8NBZ9 246 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 OR4C5Q8NGB2 326 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 C20orf78Q9BR46 151 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 SMIM2Q9BVW6 85 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 DNAH7Q8WXX0 4024 aa4.41□□□□□ -1.7
LINC00643-203ENST00000555518 MEGF8Q7Z7M0 2845 aa4.4□□□□□ -1.7
LINC00643-203ENST00000555518 DEFB130BP0DP73 79 aa4.4□□□□□ -1.71
LINC00643-203ENST00000555518 DEFB130AP0DP74 79 aa4.4□□□□□ -1.71
LINC00643-203ENST00000555518 RPL36AP83881 106 aaKnown RBP4.4□□□□□ -1.71
LINC00643-203ENST00000555518 PDZD11Q5EBL8 140 aa4.4□□□□□ -1.71
LINC00643-203ENST00000555518 NEGR1Q7Z3B1 354 aa4.4□□□□□ -1.71
LINC00643-203ENST00000555518 Q8N8P6 123 aa4.4□□□□□ -1.71
LINC00643-203ENST00000555518 CHCHD1Q96BP2 118 aaKnown RBP4.4□□□□□ -1.71
LINC00643-203ENST00000555518 HIST1H2BLQ99880 126 aa4.4□□□□□ -1.71
LINC00643-203ENST00000555518 TMEM70Q9BUB7 260 aa4.4□□□□□ -1.71
LINC00643-203ENST00000555518 MAP1LC3AQ9H492 121 aa4.4□□□□□ -1.71
LINC00643-203ENST00000555518 TRGV2A0A075B6R0 118 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 IGHV1-24A0A0C4DH33 117 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 TRBV27A0A0K0K1C4 114 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 LOC389332A0A1B0GUA5 103 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 SDHAF1A6NFY7 115 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 K7EQD1 137 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 CIDEAO60543 219 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 LINC00614P0C842 121 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 PMCHL1Q16048 86 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 C12orf74Q32Q52 190 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 RNASEKQ6P5S7 137 aaKnown RBP4.39□□□□□ -1.71
LINC00643-203ENST00000555518 FAM19A2Q8N3H0 131 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 SLC25A29Q8N8R3 303 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 PACRGQ96M98 296 aaPredicted RBP4.39□□□□□ -1.71
LINC00643-203ENST00000555518 NXT2Q9NPJ8 142 aaKnown RBP4.39□□□□□ -1.71
LINC00643-203ENST00000555518 NIT2Q9NQR4 276 aa4.39□□□□□ -1.71
LINC00643-203ENST00000555518 DYNC2H1Q8NCM8 4307 aaKnown RBP4.38□□□□□ -1.71
LINC00643-203ENST00000555518 A0A0J9YWU9 116 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 TRBV10-1A0A0K0K1A3 114 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 LOC100131303A0A0U1RQF7 123 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 TRBV6-4A0A1B0GX49 114 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 H7C1H1 209 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 TCAPO15273 167 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 PPP1R17O96001 155 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 TSHBP01222 138 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 SPART-AS1P0CW21 52 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 DEFB121Q5J5C9 76 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 LINC00173Q6ZV60 143 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 FA2HQ7L5A8 372 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 MRAPQ8TCY5 172 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 VSIG2Q96IQ7 327 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 B9D2Q9BPU9 175 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 ST20Q9HBF5 79 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 FBN3Q75N90 2809 aa4.38□□□□□ -1.71
LINC00643-203ENST00000555518 TEX48A0A1B0GUV7 120 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 FABP4P15090 132 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 PMCHP20382 165 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 AMTP48728 403 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 CRYBA4P53673 196 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 UBE2D3P61077 147 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 DAD1P61803 113 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 UBE2D2P62837 147 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 DNAJC30Q96LL9 226 aa4.37□□□□□ -1.71
LINC00643-203ENST00000555518 COL7A1Q02388 2944 aa4.36□□□□□ -1.71
LINC00643-203ENST00000555518 TRBV7-3A0A075B6L6 115 aa4.36□□□□□ -1.71
LINC00643-203ENST00000555518 TRGV4A0A0C4DH28 118 aa4.36□□□□□ -1.71
LINC00643-203ENST00000555518 VCYO14598 125 aa4.36□□□□□ -1.71
LINC00643-203ENST00000555518 HSBP1O75506 76 aa4.36□□□□□ -1.71
LINC00643-203ENST00000555518 ATP5G1P05496 136 aa4.36□□□□□ -1.71
LINC00643-203ENST00000555518 FCER1GP30273 86 aa4.36□□□□□ -1.71
LINC00643-203ENST00000555518 GAGE1Q13065 139 aa4.36□□□□□ -1.71
LINC00643-203ENST00000555518 GAGE4Q13068 117 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms