RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 ZNF25P17030 456 aaPredicted RBP9.79□□□□□ -0.84
SHMT2-217ENST00000555116 GAGE1Q13065 139 aa9.79□□□□□ -0.84
SHMT2-217ENST00000555116 MRPL51Q4U2R6 128 aaKnown RBP9.79□□□□□ -0.84
SHMT2-217ENST00000555116 NEGR1Q7Z3B1 354 aa9.79□□□□□ -0.84
SHMT2-217ENST00000555116 IGHV1-24A0A0C4DH33 117 aa9.78□□□□□ -0.84
SHMT2-217ENST00000555116 RHODO00212 210 aa9.78□□□□□ -0.84
SHMT2-217ENST00000555116 RHOHQ15669 191 aa9.78□□□□□ -0.84
SHMT2-217ENST00000555116 LYPD5Q6UWN5 251 aa9.78□□□□□ -0.84
SHMT2-217ENST00000555116 A0A087WWL8 130 aa9.77□□□□□ -0.85
SHMT2-217ENST00000555116 G0S2P27469 103 aa9.77□□□□□ -0.85
SHMT2-217ENST00000555116 PMCHL1Q16048 86 aa9.77□□□□□ -0.85
SHMT2-217ENST00000555116 ORMDL3Q8N138 153 aa9.77□□□□□ -0.85
SHMT2-217ENST00000555116 PRELID3AQ96N28 172 aa9.77□□□□□ -0.85
SHMT2-217ENST00000555116 PRADC1Q9BSG0 188 aa9.77□□□□□ -0.85
SHMT2-217ENST00000555116 DLEU1O43261 78 aa9.76□□□□□ -0.85
SHMT2-217ENST00000555116 Q9H8V8 135 aa9.76□□□□□ -0.85
SHMT2-217ENST00000555116 PAM16Q9Y3D7 125 aa9.76□□□□□ -0.85
SHMT2-217ENST00000555116 CKS2P33552 79 aa9.76□□□□□ -0.85
SHMT2-217ENST00000555116 FAM74A4Q5TZK3 123 aa9.76□□□□□ -0.85
SHMT2-217ENST00000555116 SPANXN1Q5VSR9 72 aa9.76□□□□□ -0.85
SHMT2-217ENST00000555116 C14orf178Q8N769 122 aaPredicted RBP9.76□□□□□ -0.85
SHMT2-217ENST00000555116 RNF185Q96GF1 192 aa9.76□□□□□ -0.85
SHMT2-217ENST00000555116 BTF3P20290 206 aaKnown RBP9.75□□□□□ -0.85
SHMT2-217ENST00000555116 SH2D6Q7Z4S9 175 aa9.75□□□□□ -0.85
SHMT2-217ENST00000555116 PRSS3P2Q8NHM4 247 aa9.75□□□□□ -0.85
SHMT2-217ENST00000555116 AP5S1Q9NUS5 200 aa9.75□□□□□ -0.85
SHMT2-217ENST00000555116 Q9UF83 564 aa9.75□□□□□ -0.85
SHMT2-217ENST00000555116 DNAH10Q8IVF4 4471 aa9.75□□□□□ -0.85
SHMT2-217ENST00000555116 NBDYA0A0U1RRE5 68 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 SMKR1H3BMG3 65 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 LINC00694P0DN24 101 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 IFI27P40305 119 aaPredicted RBP9.74□□□□□ -0.85
SHMT2-217ENST00000555116 COL5A1-AS1Q5SY13 56 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 UQCR10Q9UDW1 63 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 LEPROTL1O95214 131 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 TIRAPP58753 221 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 CACNG7P62955 275 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 FA2HQ7L5A8 372 aa9.74□□□□□ -0.85
SHMT2-217ENST00000555116 LOC389332A0A1B0GUA5 103 aa9.73□□□□□ -0.85
SHMT2-217ENST00000555116 NPYP01303 97 aa9.73□□□□□ -0.85
SHMT2-217ENST00000555116 PPBPP02775 128 aa9.73□□□□□ -0.85
SHMT2-217ENST00000555116 LINC00173Q6ZV60 143 aa9.73□□□□□ -0.85
SHMT2-217ENST00000555116 KIF25-AS1Q9Y6Z4 181 aa9.73□□□□□ -0.85
SHMT2-217ENST00000555116 NCR2O95944 276 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 SPATA45Q537H7 98 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 TMEM70Q9BUB7 260 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 GAGE12JA6NER3 117 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 EVI2AP22794 236 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 LINC00315P59091 139 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 GAGE4Q13068 117 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 GAGE5Q13069 117 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 GAGE13Q4V321 117 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 AP1S3Q96PC3 154 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 KRTAP1-5Q9BYS1 174 aa9.72□□□□□ -0.85
SHMT2-217ENST00000555116 FRAS1Q86XX4 4008 aa9.71□□□□□ -0.85
SHMT2-217ENST00000555116 RTL8CO15255 209 aa9.71□□□□□ -0.85
SHMT2-217ENST00000555116 SIVA1O15304 175 aa9.71□□□□□ -0.85
SHMT2-217ENST00000555116 SMIM15Q7Z3B0 74 aa9.71□□□□□ -0.85
SHMT2-217ENST00000555116 ATP6V0E2Q8NHE4 81 aa9.71□□□□□ -0.85
SHMT2-217ENST00000555116 C20orf202A1L168 122 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 SYS1-DBNDD2H3BUS1 97 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 GAS8-AS1O95177 125 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 BATFQ16520 125 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 SPATA12Q7Z6I5 190 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 HSPB8Q9UJY1 196 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 LAMTOR2Q9Y2Q5 125 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 ZNF56Q15929 161 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 WFDC10BQ8IUB3 73 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 CBY1Q9Y3M2 126 aa9.7□□□□□ -0.86
SHMT2-217ENST00000555116 A0A096LNJ9 63 aa9.69□□□□□ -0.86
SHMT2-217ENST00000555116 TRBV10-1A0A0K0K1A3 114 aa9.69□□□□□ -0.86
SHMT2-217ENST00000555116 TNFRSF6BO95407 300 aa9.69□□□□□ -0.86
SHMT2-217ENST00000555116 HNRNPA3P51991 378 aaKnown RBP9.69□□□□□ -0.86
SHMT2-217ENST00000555116 TTC32Q5I0X7 151 aa9.69□□□□□ -0.86
SHMT2-217ENST00000555116 C1orf134Q5TEV5 83 aa9.69□□□□□ -0.86
SHMT2-217ENST00000555116 GTSF1LQ9H1H1 148 aa9.69□□□□□ -0.86
SHMT2-217ENST00000555116 SMIM17P0DL12 118 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 ATOH7Q8N100 152 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 MAP1LC3CQ9BXW4 147 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 MAP1LC3AQ9H492 121 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 DNAH17Q9UFH2 4485 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 IGLC3P0DOY3 106 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 LELP1Q5T871 98 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 Q6ZN92 141 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 DNAH2Q9P225 4427 aa9.68□□□□□ -0.86
SHMT2-217ENST00000555116 LINC01546A6NGU7 62 aa9.67□□□□□ -0.86
SHMT2-217ENST00000555116 F5H697 171 aa9.67□□□□□ -0.86
SHMT2-217ENST00000555116 DNAH10OSP0CZ25 163 aa9.67□□□□□ -0.86
SHMT2-217ENST00000555116 PET117Q6UWS5 81 aa9.67□□□□□ -0.86
SHMT2-217ENST00000555116 LINC00336Q6ZUF6 198 aa9.67□□□□□ -0.86
SHMT2-217ENST00000555116 C6orf223Q8N319 242 aa9.67□□□□□ -0.86
SHMT2-217ENST00000555116 NEXN-AS1Q8NBZ9 246 aa9.67□□□□□ -0.86
SHMT2-217ENST00000555116 TRAV9-2A0A087WT02 112 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 UBE2D3P61077 147 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 UBE2D2P62837 147 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 RPL36AP83881 106 aaKnown RBP9.66□□□□□ -0.86
SHMT2-217ENST00000555116 MAJINQ3KP22 176 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 NRACQ8N912 160 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 RPL36ALQ969Q0 106 aaKnown RBP9.66□□□□□ -0.86
SHMT2-217ENST00000555116 TRBV7-3A0A075B6L6 115 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms