RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 IQCJQ1A5X6 159 aa8.36□□□□□ -1.07
SHMT2-209ENST00000553949 ALKBH7Q9BT30 221 aaPredicted RBP8.36□□□□□ -1.07
SHMT2-209ENST00000553949 SMIM2Q9BVW6 85 aa8.36□□□□□ -1.07
SHMT2-209ENST00000553949 MAP1LC3AQ9H492 121 aa8.36□□□□□ -1.07
SHMT2-209ENST00000553949 LOC389332A0A1B0GUA5 103 aa8.35□□□□□ -1.07
SHMT2-209ENST00000553949 PRSS47A8MTI9 375 aa8.35□□□□□ -1.07
SHMT2-209ENST00000553949 TSHBP01222 138 aa8.35□□□□□ -1.07
SHMT2-209ENST00000553949 RAB5AP20339 215 aa8.35□□□□□ -1.07
SHMT2-209ENST00000553949 KMT2AQ03164 3969 aa8.34□□□□□ -1.07
SHMT2-209ENST00000553949 IGLV2-18A0A075B6J9 118 aa8.34□□□□□ -1.07
SHMT2-209ENST00000553949 DNAH10OSP0CZ25 163 aa8.34□□□□□ -1.07
SHMT2-209ENST00000553949 AMTP48728 403 aa8.34□□□□□ -1.07
SHMT2-209ENST00000553949 KIR2DL4Q99706 377 aa8.34□□□□□ -1.07
SHMT2-209ENST00000553949 CHCHD5Q9BSY4 110 aa8.34□□□□□ -1.07
SHMT2-209ENST00000553949 TMEM243Q9BU79 118 aa8.34□□□□□ -1.07
SHMT2-209ENST00000553949 TMEM262E9PQX1 116 aa8.33□□□□□ -1.08
SHMT2-209ENST00000553949 FCER1GP30273 86 aa8.33□□□□□ -1.08
SHMT2-209ENST00000553949 LINC01556Q5JQF7 62 aa8.33□□□□□ -1.08
SHMT2-209ENST00000553949 NBDYA0A0U1RRE5 68 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 TCAPO15273 167 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 TRGC2P03986 189 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 GAGE6Q13070 117 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 NIT1Q86X76 327 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 Q8N3U1 123 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 Q8N8P6 123 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 CHCHD7Q9BUK0 85 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 RYR3Q15413 4870 aa8.32□□□□□ -1.08
SHMT2-209ENST00000553949 A0A087WX48 190 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 M0R2N4 97 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 UBE2L6O14933 153 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 IGHV3-30P01768 117 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 IGHV3-33P01772 117 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 IGHV3-30-3P0DP02 117 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 IGHV3-30-5P0DP03 117 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 ESDP10768 282 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 IFI27P40305 119 aaPredicted RBP8.31□□□□□ -1.08
SHMT2-209ENST00000553949 PKIAP61925 76 aa8.31□□□□□ -1.08
SHMT2-209ENST00000553949 NXT2Q9NPJ8 142 aaKnown RBP8.31□□□□□ -1.08
SHMT2-209ENST00000553949 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.3□□□□□ -1.08
SHMT2-209ENST00000553949 TRAV9-2A0A087WT02 112 aa8.3□□□□□ -1.08
SHMT2-209ENST00000553949 IGKV2-29A2NJV5 120 aaPredicted RBP8.3□□□□□ -1.08
SHMT2-209ENST00000553949 MPV17L2Q567V2 206 aa8.3□□□□□ -1.08
SHMT2-209ENST00000553949 TTC32Q5I0X7 151 aa8.3□□□□□ -1.08
SHMT2-209ENST00000553949 Q6ZR54 194 aa8.3□□□□□ -1.08
SHMT2-209ENST00000553949 PRSS3P2Q8NHM4 247 aa8.3□□□□□ -1.08
SHMT2-209ENST00000553949 KRTAP1-5Q9BYS1 174 aa8.3□□□□□ -1.08
SHMT2-209ENST00000553949 DNAH2Q9P225 4427 aa8.3□□□□□ -1.08
SHMT2-209ENST00000553949 H7C423 109 aa8.29□□□□□ -1.08
SHMT2-209ENST00000553949 K7EP13 123 aa8.29□□□□□ -1.08
SHMT2-209ENST00000553949 RBX1P62877 108 aa8.29□□□□□ -1.08
SHMT2-209ENST00000553949 C10orf126Q8N4M7 172 aa8.29□□□□□ -1.08
SHMT2-209ENST00000553949 C18orf32Q8TCD1 76 aa8.29□□□□□ -1.08
SHMT2-209ENST00000553949 K7EMI3 77 aa8.28□□□□□ -1.08
SHMT2-209ENST00000553949 Q8N976 141 aa8.28□□□□□ -1.08
SHMT2-209ENST00000553949 C20orf203Q8NBC4 194 aa8.28□□□□□ -1.08
SHMT2-209ENST00000553949 A0A1B0GUV1 79 aa8.27□□□□□ -1.09
SHMT2-209ENST00000553949 FGF6P10767 208 aa8.27□□□□□ -1.09
SHMT2-209ENST00000553949 LAGE3Q14657 143 aa8.27□□□□□ -1.09
SHMT2-209ENST00000553949 ORMDL2Q53FV1 153 aa8.27□□□□□ -1.09
SHMT2-209ENST00000553949 AMMECR1LQ6DCA0 310 aa8.27□□□□□ -1.09
SHMT2-209ENST00000553949 IGLV4-60A0A075B6I1 120 aa8.26□□□□□ -1.09
SHMT2-209ENST00000553949 LINC01546A6NGU7 62 aa8.26□□□□□ -1.09
SHMT2-209ENST00000553949 IBA57-AS1B1ANH7 110 aa8.26□□□□□ -1.09
SHMT2-209ENST00000553949 RNASEKQ6P5S7 137 aaKnown RBP8.26□□□□□ -1.09
SHMT2-209ENST00000553949 FA2HQ7L5A8 372 aa8.26□□□□□ -1.09
SHMT2-209ENST00000553949 TMEM18Q96B42 140 aa8.26□□□□□ -1.09
SHMT2-209ENST00000553949 KLK12Q9UKR0 248 aa8.26□□□□□ -1.09
SHMT2-209ENST00000553949 ANGP03950 147 aaKnown RBP8.25□□□□□ -1.09
SHMT2-209ENST00000553949 ZNF25P17030 456 aaPredicted RBP8.25□□□□□ -1.09
SHMT2-209ENST00000553949 RPL39P62891 51 aaKnown RBP8.25□□□□□ -1.09
SHMT2-209ENST00000553949 SMAGPQ0VAQ4 97 aa8.25□□□□□ -1.09
SHMT2-209ENST00000553949 MRPL52Q86TS9 123 aaKnown RBP8.25□□□□□ -1.09
SHMT2-209ENST00000553949 URB1-AS1Q96HZ7 61 aa8.25□□□□□ -1.09
SHMT2-209ENST00000553949 UBE2D4Q9Y2X8 147 aa8.25□□□□□ -1.09
SHMT2-209ENST00000553949 LINC00614P0C842 121 aa8.24□□□□□ -1.09
SHMT2-209ENST00000553949 BTF3P20290 206 aaKnown RBP8.24□□□□□ -1.09
SHMT2-209ENST00000553949 RAB5BP61020 215 aa8.24□□□□□ -1.09
SHMT2-209ENST00000553949 Q0VG73 95 aa8.24□□□□□ -1.09
SHMT2-209ENST00000553949 OR5A1Q8NGJ0 315 aa8.24□□□□□ -1.09
SHMT2-209ENST00000553949 TMEM101Q96IK0 257 aa8.24□□□□□ -1.09
SHMT2-209ENST00000553949 AP5S1Q9NUS5 200 aa8.24□□□□□ -1.09
SHMT2-209ENST00000553949 DNAH10Q8IVF4 4471 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 DNAH17Q9UFH2 4485 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 G0S2P27469 103 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 C1orf134Q5TEV5 83 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 DGAT2L7PQ6IED9 249 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 C2orf66Q6UXQ4 117 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 BAGE3Q86Y29 109 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 LINC00269Q8N2A0 174 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 C6orf223Q8N319 242 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 UBE2WQ96B02 151 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 TIMM21Q9BVV7 248 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 CYSLTR1Q9Y271 337 aa8.23□□□□□ -1.09
SHMT2-209ENST00000553949 CSDC2Q9Y534 153 aaKnown RBP8.23□□□□□ -1.09
SHMT2-209ENST00000553949 TRAV8-3A0A0A6YYJ7 113 aa8.22□□□□□ -1.09
SHMT2-209ENST00000553949 CRPP02741 224 aa8.22□□□□□ -1.09
SHMT2-209ENST00000553949 CLPSL2Q6UWE3 100 aa8.22□□□□□ -1.09
SHMT2-209ENST00000553949 ENHOQ6UWT2 76 aa8.22□□□□□ -1.09
SHMT2-209ENST00000553949 Q9HAA7 133 aa8.22□□□□□ -1.09
SHMT2-209ENST00000553949 CDC42SE2Q9NRR3 84 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms