RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 HIST1H2BKO60814 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 TNFRSF6BO95407 300 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 IGHV3-53P01767 116 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 ATP5G1P05496 136 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST1H2BJP06899 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 PMCHP20382 165 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST1H2BOP23527 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST1H2BBP33778 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST1H2BDP58876 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST1H2BCP62807 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 RPL32P62910 135 aaKnown RBP3.56□□□□□ -1.84
VTI1B-202ENST00000553619 RPL36AP83881 106 aaKnown RBP3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST2H2BEQ16778 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.56□□□□□ -1.84
VTI1B-202ENST00000553619 COL5A1-AS1Q5SY13 56 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 Q6ZTI0 123 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 FA2HQ7L5A8 372 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 LINC00612Q8N6U2 182 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 Q8NAQ8 132 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 ORAOV1Q8WV07 137 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST1H2BHQ93079 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST1H2BNQ99877 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 HIST1H2BMQ99879 126 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 JPT2Q9H910 190 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 ST20Q9HBF5 79 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 DNHD1Q96M86 4753 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 STAB1Q9NY15 2570 aa3.56□□□□□ -1.84
VTI1B-202ENST00000553619 TRBV6-5A0A0K0K1A5 114 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 M0QY20 66 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 LINC00315P59091 139 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 RHOHQ15669 191 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 TMEM97Q5BJF2 176 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 PYY3Q5JQD4 70 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 UFSP1Q6NVU6 142 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 SH2D6Q7Z4S9 175 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 NIT1Q86X76 327 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 C11orf45Q8TAV5 145 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 C18orf32Q8TCD1 76 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 TMEM18Q96B42 140 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 CHCHD1Q96BP2 118 aaKnown RBP3.55□□□□□ -1.84
VTI1B-202ENST00000553619 ZNF479Q96JC4 524 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 PACRGQ96M98 296 aaPredicted RBP3.55□□□□□ -1.84
VTI1B-202ENST00000553619 KIR2DL4Q99706 377 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 SAMD10Q9BYL1 202 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 PRO0255Q9UI72 69 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 HHLA3Q9XRX5 114 aa3.55□□□□□ -1.84
VTI1B-202ENST00000553619 TRBV7-3A0A075B6L6 115 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 IGHV3-73A0A0B4J1V6 119 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 LOC389332A0A1B0GUA5 103 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 SDHAF1A6NFY7 115 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 F5H768 121 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 SMKR1H3BMG3 65 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 I3L3M4 83 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 K7EQD1 137 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 HSBP1O75506 76 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 GATA1P15976 413 aaPredicted RBP3.54□□□□□ -1.84
VTI1B-202ENST00000553619 POLR2KP53803 58 aaKnown RBP3.54□□□□□ -1.84
VTI1B-202ENST00000553619 SMAGPQ0VAQ4 97 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 JOSD1Q15040 202 aaPredicted RBP3.54□□□□□ -1.84
VTI1B-202ENST00000553619 IQCJQ1A5X6 159 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 ORMDL2Q53FV1 153 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 COA6Q5JTJ3 125 aaKnown RBP3.54□□□□□ -1.84
VTI1B-202ENST00000553619 DAZ4Q86SG3 579 aaKnown RBP3.54□□□□□ -1.84
VTI1B-202ENST00000553619 Q8N8P6 123 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 DAZ3Q9NR90 486 aaKnown RBP3.54□□□□□ -1.84
VTI1B-202ENST00000553619 NBEAL1Q6ZS30 2694 aa3.54□□□□□ -1.84
VTI1B-202ENST00000553619 FBN1P35555 2871 aaKnown RBP3.53□□□□□ -1.84
VTI1B-202ENST00000553619 TRAV26-2A0A0B4J265 109 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 A0A0J9YWU9 116 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 H3BNG1 76 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 DEFB4AO15263 64 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 NCR2O95944 276 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 SCGB1D1O95968 90 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 NPYP01303 97 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 ESDP10768 282 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 FCER1GP30273 86 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 IFI27P40305 119 aaPredicted RBP3.53□□□□□ -1.84
VTI1B-202ENST00000553619 CRYBA4P53673 196 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 LAGE3Q14657 143 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 MRPL23Q16540 153 aaKnown RBP3.53□□□□□ -1.84
VTI1B-202ENST00000553619 SLC25A29Q8N8R3 303 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 NRACQ8N912 160 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 NEXN-AS1Q8NBZ9 246 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 ZNRF2Q8NHG8 242 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 TMEM70Q9BUB7 260 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 SMIM2Q9BVW6 85 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 RETNQ9HD89 108 aa3.53□□□□□ -1.84
VTI1B-202ENST00000553619 TRAV10A0A0B4J240 114 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 TRBV27A0A0K0K1C4 114 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 LINC01546A6NGU7 62 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 SERF1AO75920 110 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 HTN3P15516 51 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 UBE2V1Q13404 147 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 C12orf74Q32Q52 190 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 C10orf25Q5T742 122 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 RNASEKQ6P5S7 137 aaKnown RBP3.52□□□□□ -1.85
VTI1B-202ENST00000553619 OR10D4PQ8NGN7 298 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 ATP6V0E2Q8NHE4 81 aa3.52□□□□□ -1.85
VTI1B-202ENST00000553619 RPL39LQ96EH5 51 aaKnown RBP3.52□□□□□ -1.85
VTI1B-202ENST00000553619 SNHG12Q9BXW3 62 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms