RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 C20orf203Q8NBC4 194 aa12.66□□□□□ -0.38
PTCH1-227ENST00000553256 NUP35Q8NFH5 326 aa12.66□□□□□ -0.38
PTCH1-227ENST00000553256 TMEM191AQ9H0A3 160 aa12.66□□□□□ -0.38
PTCH1-227ENST00000553256 IGKV2D-24A0A075B6R9 120 aa12.65□□□□□ -0.38
PTCH1-227ENST00000553256 IGLV5-52A0A0A0MRZ9 124 aa12.65□□□□□ -0.38
PTCH1-227ENST00000553256 LECT2O14960 151 aa12.65□□□□□ -0.38
PTCH1-227ENST00000553256 RMI2Q96E14 147 aa12.65□□□□□ -0.38
PTCH1-227ENST00000553256 DEFB104AQ8WTQ1 72 aa12.64□□□□□ -0.39
PTCH1-227ENST00000553256 IGLV4-60A0A075B6I1 120 aa12.63□□□□□ -0.39
PTCH1-227ENST00000553256 SMIM27A0A1W2PRY6 76 aa12.63□□□□□ -0.39
PTCH1-227ENST00000553256 ANGP03950 147 aaKnown RBP12.63□□□□□ -0.39
PTCH1-227ENST00000553256 RAB4AP20338 218 aa12.63□□□□□ -0.39
PTCH1-227ENST00000553256 MIAQ16674 131 aa12.63□□□□□ -0.39
PTCH1-227ENST00000553256 KCNIP4Q6PIL6 250 aa12.63□□□□□ -0.39
PTCH1-227ENST00000553256 TMEM243Q9BU79 118 aa12.63□□□□□ -0.39
PTCH1-227ENST00000553256 FAM30AQ9NZY2 134 aa12.63□□□□□ -0.39
PTCH1-227ENST00000553256 ADIRFQ15847 76 aa12.62□□□□□ -0.39
PTCH1-227ENST00000553256 Q6ZSA8 131 aa12.62□□□□□ -0.39
PTCH1-227ENST00000553256 LINC00269Q8N2A0 174 aa12.62□□□□□ -0.39
PTCH1-227ENST00000553256 SDHAF1A6NFY7 115 aa12.61□□□□□ -0.39
PTCH1-227ENST00000553256 RPS10P46783 165 aaKnown RBP12.61□□□□□ -0.39
PTCH1-227ENST00000553256 SMIM15Q7Z3B0 74 aa12.61□□□□□ -0.39
PTCH1-227ENST00000553256 POLR2KP53803 58 aaKnown RBP12.6□□□□□ -0.39
PTCH1-227ENST00000553256 COTL1Q14019 142 aa12.6□□□□□ -0.39
PTCH1-227ENST00000553256 AMN1Q8IY45 258 aa12.6□□□□□ -0.39
PTCH1-227ENST00000553256 TMEM70Q9BUB7 260 aa12.6□□□□□ -0.39
PTCH1-227ENST00000553256 C1orf43Q9BWL3 253 aa12.6□□□□□ -0.39
PTCH1-227ENST00000553256 NAT8BQ9UHF3 227 aa12.6□□□□□ -0.39
PTCH1-227ENST00000553256 NCR2O95944 276 aa12.59□□□□□ -0.39
PTCH1-227ENST00000553256 CRPP02741 224 aa12.58□□□□□ -0.4
PTCH1-227ENST00000553256 ESDP10768 282 aa12.58□□□□□ -0.4
PTCH1-227ENST00000553256 AMTP48728 403 aa12.58□□□□□ -0.4
PTCH1-227ENST00000553256 IFITM2Q01629 132 aa12.58□□□□□ -0.4
PTCH1-227ENST00000553256 REG3AQ06141 175 aa12.58□□□□□ -0.4
PTCH1-227ENST00000553256 NRACQ8N912 160 aa12.58□□□□□ -0.4
PTCH1-227ENST00000553256 RIGQ13278 110 aa12.57□□□□□ -0.4
PTCH1-227ENST00000553256 CLPSL2Q6UWE3 100 aa12.57□□□□□ -0.4
PTCH1-227ENST00000553256 BORCS7Q96B45 105 aa12.57□□□□□ -0.4
PTCH1-227ENST00000553256 MRAP2Q96G30 205 aa12.57□□□□□ -0.4
PTCH1-227ENST00000553256 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.56□□□□□ -0.4
PTCH1-227ENST00000553256 TRBV27A0A0K0K1C4 114 aa12.56□□□□□ -0.4
PTCH1-227ENST00000553256 A0A1B0GXF2 115 aa12.56□□□□□ -0.4
PTCH1-227ENST00000553256 TSHBP01222 138 aa12.56□□□□□ -0.4
PTCH1-227ENST00000553256 CLLU1Q5K131 121 aa12.56□□□□□ -0.4
PTCH1-227ENST00000553256 I3L3M4 83 aa12.55□□□□□ -0.4
PTCH1-227ENST00000553256 FAM104BQ5XKR9 115 aa12.55□□□□□ -0.4
PTCH1-227ENST00000553256 USP17L23D6RBM5 183 aa12.54□□□□□ -0.4
PTCH1-227ENST00000553256 H7C423 109 aa12.54□□□□□ -0.4
PTCH1-227ENST00000553256 TRAV8-4A0A0B4J246 113 aa12.53□□□□□ -0.4
PTCH1-227ENST00000553256 SMKR1H3BMG3 65 aa12.53□□□□□ -0.4
PTCH1-227ENST00000553256 HAMPP81172 84 aa12.53□□□□□ -0.4
PTCH1-227ENST00000553256 LINC01620Q4KN68 170 aa12.53□□□□□ -0.4
PTCH1-227ENST00000553256 MRPL51Q4U2R6 128 aaKnown RBP12.53□□□□□ -0.4
PTCH1-227ENST00000553256 ST20Q9HBF5 79 aa12.53□□□□□ -0.4
PTCH1-227ENST00000553256 MYCBP2O75592 4640 aa12.52□□□□□ -0.4
PTCH1-227ENST00000553256 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.52□□□□□ -0.41
PTCH1-227ENST00000553256 IGKV2-29A2NJV5 120 aaPredicted RBP12.52□□□□□ -0.41
PTCH1-227ENST00000553256 APCSP02743 223 aa12.52□□□□□ -0.41
PTCH1-227ENST00000553256 PRSS1P07477 247 aa12.52□□□□□ -0.41
PTCH1-227ENST00000553256 IGLV10-54A0A075B6I4 117 aa12.51□□□□□ -0.41
PTCH1-227ENST00000553256 FGF6P10767 208 aa12.51□□□□□ -0.41
PTCH1-227ENST00000553256 TMEM242Q9NWH2 141 aa12.51□□□□□ -0.41
PTCH1-227ENST00000553256 SRRM2Q9UQ35 2752 aaKnown RBP12.51□□□□□ -0.41
PTCH1-227ENST00000553256 TRBV24-1A0A075B6N3 115 aa12.5□□□□□ -0.41
PTCH1-227ENST00000553256 A0A1B0GW15 77 aa12.5□□□□□ -0.41
PTCH1-227ENST00000553256 UBE2L6O14933 153 aa12.5□□□□□ -0.41
PTCH1-227ENST00000553256 HLA-DQA1P01909 254 aa12.5□□□□□ -0.41
PTCH1-227ENST00000553256 PMCHP20382 165 aa12.49□□□□□ -0.41
PTCH1-227ENST00000553256 C14orf177Q52M58 125 aa12.49□□□□□ -0.41
PTCH1-227ENST00000553256 CAMPP49913 170 aa12.48□□□□□ -0.41
PTCH1-227ENST00000553256 RAB14P61106 215 aa12.48□□□□□ -0.41
PTCH1-227ENST00000553256 SUMO2P61956 95 aaKnown RBP12.48□□□□□ -0.41
PTCH1-227ENST00000553256 RPL32P62910 135 aaKnown RBP12.48□□□□□ -0.41
PTCH1-227ENST00000553256 MRPL52Q86TS9 123 aaKnown RBP12.48□□□□□ -0.41
PTCH1-227ENST00000553256 LINC00862A6NCI5 91 aa12.47□□□□□ -0.41
PTCH1-227ENST00000553256 EPM2AB3EWF7 344 aa12.47□□□□□ -0.41
PTCH1-227ENST00000553256 SMR3BP02814 79 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-227ENST00000553256 SLPIP03973 132 aa12.47□□□□□ -0.41
PTCH1-227ENST00000553256 ZNF25P17030 456 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-227ENST00000553256 PNRC1Q12796 327 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-227ENST00000553256 MRPL54Q6P161 138 aaKnown RBP12.47□□□□□ -0.41
PTCH1-227ENST00000553256 VCYO14598 125 aa12.46□□□□□ -0.41
PTCH1-227ENST00000553256 PPP1R17O96001 155 aa12.46□□□□□ -0.41
PTCH1-227ENST00000553256 ADCYAP1P18509 176 aa12.46□□□□□ -0.41
PTCH1-227ENST00000553256 HBBP68871 147 aa12.46□□□□□ -0.41
PTCH1-227ENST00000553256 Q5VSD8 79 aa12.46□□□□□ -0.41
PTCH1-227ENST00000553256 DGAT2L7PQ6IED9 249 aa12.45□□□□□ -0.42
PTCH1-227ENST00000553256 C9orf163Q8N9P6 203 aa12.45□□□□□ -0.42
PTCH1-227ENST00000553256 C20orf78Q9BR46 151 aa12.45□□□□□ -0.42
PTCH1-227ENST00000553256 HERC1Q15751 4861 aa12.44□□□□□ -0.42
PTCH1-227ENST00000553256 PPP1R2P9O14990 202 aa12.44□□□□□ -0.42
PTCH1-227ENST00000553256 CNBPP62633 177 aaKnown RBP12.44□□□□□ -0.42
PTCH1-227ENST00000553256 ATP5L2Q7Z4Y8 100 aa12.44□□□□□ -0.42
PTCH1-227ENST00000553256 C15orf56Q8N910 161 aa12.44□□□□□ -0.42
PTCH1-227ENST00000553256 CLRN3Q8NCR9 226 aa12.44□□□□□ -0.42
PTCH1-227ENST00000553256 CDC42SE2Q9NRR3 84 aa12.44□□□□□ -0.42
PTCH1-227ENST00000553256 AMMECR1LQ6DCA0 310 aa12.43□□□□□ -0.42
PTCH1-227ENST00000553256 RNASEKQ6P5S7 137 aaKnown RBP12.43□□□□□ -0.42
PTCH1-227ENST00000553256 SCXQ7RTU7 201 aa12.43□□□□□ -0.42
PTCH1-227ENST00000553256 OR5A1Q8NGJ0 315 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms