RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 M0QY20 66 aa4.09□□□□□ -1.75
LIMA1-215ENST00000552823 TOMM6Q96B49 74 aa4.09□□□□□ -1.75
LIMA1-215ENST00000552823 TRGV11A0A075B6L2 103 aa4.09□□□□□ -1.76
LIMA1-215ENST00000552823 SAMD5Q5TGI4 173 aa4.09□□□□□ -1.76
LIMA1-215ENST00000552823 LINC00482Q8N8I6 264 aa4.09□□□□□ -1.76
LIMA1-215ENST00000552823 DAND5Q8N907 189 aa4.09□□□□□ -1.76
LIMA1-215ENST00000552823 SPATA3Q8NHX4 192 aa4.09□□□□□ -1.76
LIMA1-215ENST00000552823 ZNF418Q8TF45 676 aaPredicted RBP4.09□□□□□ -1.76
LIMA1-215ENST00000552823 ZNF479Q96JC4 524 aa4.09□□□□□ -1.76
LIMA1-215ENST00000552823 FAM19A4Q96LR4 140 aa4.09□□□□□ -1.76
LIMA1-215ENST00000552823 C20orf78Q9BR46 151 aa4.09□□□□□ -1.76
LIMA1-215ENST00000552823 IGHV4-4A0A075B6R2 117 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 LOC100131303A0A0U1RQF7 123 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 POLR2KP53803 58 aaKnown RBP4.08□□□□□ -1.76
LIMA1-215ENST00000552823 KLK9Q2XQG4 91 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 NEXN-AS1Q8NBZ9 246 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 SPINK8P0C7L1 97 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 SCGB1C2P0DMR2 95 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 HTN3P15516 51 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 LGALS3P17931 250 aaKnown RBP4.08□□□□□ -1.76
LIMA1-215ENST00000552823 PMVKQ15126 192 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 C4orf3Q8WVX3 66 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 FSHBP01225 129 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 INSP01308 110 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 FABP2P12104 132 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 TSPEAR-AS2P59090 65 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 Q1RN00 199 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 TRPT1Q86TN4 253 aaKnown RBP4.08□□□□□ -1.76
LIMA1-215ENST00000552823 CST9LQ9H4G1 147 aa4.08□□□□□ -1.76
LIMA1-215ENST00000552823 MYMXA0A1B0GTQ4 84 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 LINC01549A6NIU2 74 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 H3BMG7 143 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 I3L3M4 83 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 LY6G6DO95868 133 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 ZNF415Q09FC8 603 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 RRN3P1Q2M238 152 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 C9orf85Q96MD7 179 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 C11orf68Q9H3H3 251 aaKnown RBP4.07□□□□□ -1.76
LIMA1-215ENST00000552823 TRRAPQ9Y4A5 3859 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 C9orf118A6NHY6 69 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 M0R2P5 195 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 LGALS9O00182 355 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 PLNP26678 52 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 HERVK_113P61574 105 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 SEC11AP67812 179 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 CLPSL2Q6UWE3 100 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 CEND1Q8N111 149 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 TOMM7Q9P0U1 55 aa4.07□□□□□ -1.76
LIMA1-215ENST00000552823 TMEM89A2RUT3 159 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 C12orf74Q32Q52 190 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 SH2D6Q7Z4S9 175 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 C1orf158Q8N1D5 194 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 LINC00467Q9BRT7 94 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 PGPEP1Q9NXJ5 209 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 PSMB2P49721 201 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 OXLD1Q5BKU9 147 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 C4orf48Q5BLP8 95 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 CFAP126Q5VTH2 177 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 Q6ZUT4 128 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 C20orf203Q8NBC4 194 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 GEMIN7Q9H840 131 aaKnown RBP4.06□□□□□ -1.76
LIMA1-215ENST00000552823 FBN1P35555 2871 aaKnown RBP4.06□□□□□ -1.76
LIMA1-215ENST00000552823 TRGV4A0A0C4DH28 118 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 H3BRM9 83 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 PPP1R17O96001 155 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 GAGE6Q13070 117 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 GTF2H5Q6ZYL4 71 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 POM121L12Q8N7R1 296 aa4.06□□□□□ -1.76
LIMA1-215ENST00000552823 TSSC4Q9Y5U2 329 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-215ENST00000552823 AKAP9Q99996 3911 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 IGLV4-69A0A075B6H9 119 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 A0A0J9YY99 117 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 IGIPA6NJ69 53 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 TMEM262E9PQX1 116 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 J3QQQ9 107 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 WFDC2Q14508 124 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 LRRC75A-AS1Q8N1F1 130 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 ZMAT4Q9H898 229 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 A0A1W2PPM0 123 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 ETDBQ3ZM63 59 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 SAMD13Q5VXD3 122 aa4.05□□□□□ -1.76
LIMA1-215ENST00000552823 MRPL52Q86TS9 123 aaKnown RBP4.05□□□□□ -1.76
LIMA1-215ENST00000552823 IGLV4-3A0A075B6K6 122 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 LINC00694P0DN24 101 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 KRTAP1-1Q07627 177 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 PTH2Q96A98 100 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 IGLL5B9A064 214 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 BRI3O95415 125 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 TRBV27A0A0K0K1C4 114 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 A8MWV9 139 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 MED14OSP0DP75 135 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 CHCHD5Q9BSY4 110 aa4.04□□□□□ -1.76
LIMA1-215ENST00000552823 ANK3Q12955 4377 aaKnown RBP4.03□□□□□ -1.76
LIMA1-215ENST00000552823 TRAV12-1A0A0B4J245 112 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 A0A1B0GWB2 263 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 E9PLD3 99 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 CRLF1O75462 422 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 ZNF22P17026 224 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-215ENST00000552823 KRTAP10-3P60369 221 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 DEFB135Q30KP9 77 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms