RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CEBPGP53567 150 aa10.6□□□□□ -0.71
VPS29-207ENST00000549970 CIRBP-AS1Q8TBR5 109 aa10.6□□□□□ -0.71
VPS29-207ENST00000549970 GTSF1Q8WW33 167 aa10.6□□□□□ -0.71
VPS29-207ENST00000549970 TMEM250H0YL14 139 aa10.59□□□□□ -0.71
VPS29-207ENST00000549970 UBE2L6O14933 153 aa10.59□□□□□ -0.71
VPS29-207ENST00000549970 COTL1Q14019 142 aa10.59□□□□□ -0.71
VPS29-207ENST00000549970 GATD1Q8NB37 220 aa10.59□□□□□ -0.71
VPS29-207ENST00000549970 GFRA4Q9GZZ7 299 aa10.59□□□□□ -0.71
VPS29-207ENST00000549970 A0A1B0GUV1 79 aa10.58□□□□□ -0.72
VPS29-207ENST00000549970 GATCO43716 136 aaKnown RBP10.58□□□□□ -0.72
VPS29-207ENST00000549970 AMTP48728 403 aa10.58□□□□□ -0.72
VPS29-207ENST00000549970 SMIM15Q7Z3B0 74 aa10.58□□□□□ -0.72
VPS29-207ENST00000549970 FOXA3P55318 350 aaPredicted RBP10.57□□□□□ -0.72
VPS29-207ENST00000549970 LYPD6BQ8NI32 183 aa10.57□□□□□ -0.72
VPS29-207ENST00000549970 RPL39LQ96EH5 51 aaKnown RBP10.57□□□□□ -0.72
VPS29-207ENST00000549970 TRAV8-4A0A0B4J246 113 aa10.56□□□□□ -0.72
VPS29-207ENST00000549970 DGAT2L7PQ6IED9 249 aa10.56□□□□□ -0.72
VPS29-207ENST00000549970 FAM231DQ6ZW35 169 aa10.56□□□□□ -0.72
VPS29-207ENST00000549970 PKHD1L1Q86WI1 4243 aa10.55□□□□□ -0.72
VPS29-207ENST00000549970 A8MWL6 223 aa10.55□□□□□ -0.72
VPS29-207ENST00000549970 J3QL48 77 aa10.55□□□□□ -0.72
VPS29-207ENST00000549970 EIF5A2Q9GZV4 153 aaKnown RBP10.55□□□□□ -0.72
VPS29-207ENST00000549970 C9orf163Q8N9P6 203 aa10.54□□□□□ -0.72
VPS29-207ENST00000549970 CLRN3Q8NCR9 226 aa10.54□□□□□ -0.72
VPS29-207ENST00000549970 IGKV3OR2-268A0A0C4DH90 116 aa10.53□□□□□ -0.72
VPS29-207ENST00000549970 hDV102S1A0JD36 115 aa10.53□□□□□ -0.72
VPS29-207ENST00000549970 SMIM7Q9BQ49 75 aa10.53□□□□□ -0.72
VPS29-207ENST00000549970 FAT3Q8TDW7 4589 aa10.52□□□□□ -0.72
VPS29-207ENST00000549970 LRP1Q07954 4544 aaKnown RBP10.52□□□□□ -0.73
VPS29-207ENST00000549970 APCSP02743 223 aa10.52□□□□□ -0.73
VPS29-207ENST00000549970 CT83Q5H943 113 aa10.52□□□□□ -0.73
VPS29-207ENST00000549970 TEX261Q6UWH6 196 aa10.52□□□□□ -0.73
VPS29-207ENST00000549970 BORCS7Q96B45 105 aa10.52□□□□□ -0.73
VPS29-207ENST00000549970 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.51□□□□□ -0.73
VPS29-207ENST00000549970 IGKV2-29A2NJV5 120 aaPredicted RBP10.51□□□□□ -0.73
VPS29-207ENST00000549970 SDHAF1A6NFY7 115 aa10.51□□□□□ -0.73
VPS29-207ENST00000549970 KRTAP10-4P60372 401 aaPredicted RBP10.51□□□□□ -0.73
VPS29-207ENST00000549970 AMMECR1LQ6DCA0 310 aa10.51□□□□□ -0.73
VPS29-207ENST00000549970 RNASEKQ6P5S7 137 aaKnown RBP10.51□□□□□ -0.73
VPS29-207ENST00000549970 LINC01551Q86U37 167 aa10.51□□□□□ -0.73
VPS29-207ENST00000549970 FAM210AQ96ND0 272 aa10.51□□□□□ -0.73
VPS29-207ENST00000549970 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.51□□□□□ -0.73
VPS29-207ENST00000549970 ZNF727A8MUV8 499 aa10.5□□□□□ -0.73
VPS29-207ENST00000549970 HIGD1CA8MV81 97 aa10.5□□□□□ -0.73
VPS29-207ENST00000549970 NCR2O95944 276 aa10.5□□□□□ -0.73
VPS29-207ENST00000549970 AP5S1Q9NUS5 200 aa10.5□□□□□ -0.73
VPS29-207ENST00000549970 GAGE12HA6NDE8 117 aa10.49□□□□□ -0.73
VPS29-207ENST00000549970 PANO1I0J062 215 aa10.49□□□□□ -0.73
VPS29-207ENST00000549970 SRP19P09132 144 aaKnown RBP10.49□□□□□ -0.73
VPS29-207ENST00000549970 CNBPP62633 177 aaKnown RBP10.49□□□□□ -0.73
VPS29-207ENST00000549970 SDIM1Q6ZPB5 146 aa10.49□□□□□ -0.73
VPS29-207ENST00000549970 TSKUQ8WUA8 353 aa10.49□□□□□ -0.73
VPS29-207ENST00000549970 A0A1B0GUT8 65 aa10.48□□□□□ -0.73
VPS29-207ENST00000549970 KRTAP29-1A8MX34 341 aaPredicted RBP10.48□□□□□ -0.73
VPS29-207ENST00000549970 NDUFS6O75380 124 aaKnown RBP10.48□□□□□ -0.73
VPS29-207ENST00000549970 GAS8-AS1O95177 125 aa10.48□□□□□ -0.73
VPS29-207ENST00000549970 FGF6P10767 208 aa10.48□□□□□ -0.73
VPS29-207ENST00000549970 PMCHP20382 165 aa10.48□□□□□ -0.73
VPS29-207ENST00000549970 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.47□□□□□ -0.73
VPS29-207ENST00000549970 A0A1B0GVG6 124 aa10.47□□□□□ -0.73
VPS29-207ENST00000549970 H7C423 109 aa10.47□□□□□ -0.73
VPS29-207ENST00000549970 I3L3M4 83 aa10.47□□□□□ -0.73
VPS29-207ENST00000549970 SLPIP03973 132 aa10.47□□□□□ -0.73
VPS29-207ENST00000549970 RPL37AP61513 92 aaKnown RBP10.47□□□□□ -0.73
VPS29-207ENST00000549970 OSTCQ9NRP0 149 aa10.47□□□□□ -0.73
VPS29-207ENST00000549970 IGHV3-64A0A075B6Q5 118 aa10.46□□□□□ -0.73
VPS29-207ENST00000549970 TRBV6-5A0A0K0K1A5 114 aa10.46□□□□□ -0.73
VPS29-207ENST00000549970 C15orf56Q8N910 161 aa10.46□□□□□ -0.73
VPS29-207ENST00000549970 CHCHD10Q8WYQ3 142 aaPredicted RBP10.46□□□□□ -0.73
VPS29-207ENST00000549970 TMEM191AQ9H0A3 160 aa10.46□□□□□ -0.73
VPS29-207ENST00000549970 ST20Q9HBF5 79 aa10.46□□□□□ -0.73
VPS29-207ENST00000549970 TMEM242Q9NWH2 141 aa10.46□□□□□ -0.73
VPS29-207ENST00000549970 FAM231BA6NCW3 169 aa10.45□□□□□ -0.74
VPS29-207ENST00000549970 CFAP161Q6P656 301 aa10.45□□□□□ -0.74
VPS29-207ENST00000549970 RNF185Q96GF1 192 aa10.45□□□□□ -0.74
VPS29-207ENST00000549970 TSHBP01222 138 aa10.44□□□□□ -0.74
VPS29-207ENST00000549970 RAB4AP20338 218 aa10.44□□□□□ -0.74
VPS29-207ENST00000549970 RPS10P46783 165 aaKnown RBP10.44□□□□□ -0.74
VPS29-207ENST00000549970 HIGD2BQ4VC39 106 aa10.44□□□□□ -0.74
VPS29-207ENST00000549970 AMN1Q8IY45 258 aa10.44□□□□□ -0.74
VPS29-207ENST00000549970 BTF3L4Q96K17 158 aa10.44□□□□□ -0.74
VPS29-207ENST00000549970 V9GYV3 84 aa10.44□□□□□ -0.74
VPS29-207ENST00000549970 CHTF8P0CG12 524 aa10.43□□□□□ -0.74
VPS29-207ENST00000549970 ZNF25P17030 456 aaPredicted RBP10.43□□□□□ -0.74
VPS29-207ENST00000549970 NUP35Q8NFH5 326 aa10.43□□□□□ -0.74
VPS29-207ENST00000549970 ISOC2Q96AB3 205 aa10.43□□□□□ -0.74
VPS29-207ENST00000549970 DPH3Q96FX2 82 aa10.43□□□□□ -0.74
VPS29-207ENST00000549970 MRAP2Q96G30 205 aa10.43□□□□□ -0.74
VPS29-207ENST00000549970 TMEM101Q96IK0 257 aa10.43□□□□□ -0.74
VPS29-207ENST00000549970 SMKR1H3BMG3 65 aa10.42□□□□□ -0.74
VPS29-207ENST00000549970 ESDP10768 282 aa10.42□□□□□ -0.74
VPS29-207ENST00000549970 RIGQ13278 110 aa10.42□□□□□ -0.74
VPS29-207ENST00000549970 CIRBPQ14011 172 aaKnown RBP10.42□□□□□ -0.74
VPS29-207ENST00000549970 TMEM241Q24JQ0 296 aa10.42□□□□□ -0.74
VPS29-207ENST00000549970 OR5A1Q8NGJ0 315 aa10.42□□□□□ -0.74
VPS29-207ENST00000549970 XCL1P47992 114 aa10.41□□□□□ -0.74
VPS29-207ENST00000549970 HNRNPA3P51991 378 aaKnown RBP10.41□□□□□ -0.74
VPS29-207ENST00000549970 POLR2KP53803 58 aaKnown RBP10.41□□□□□ -0.74
VPS29-207ENST00000549970 RPL23P62829 140 aaKnown RBP10.41□□□□□ -0.74
VPS29-207ENST00000549970 ADIRFQ15847 76 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms