RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 IGLV4-69A0A075B6H9 119 aa8.01□□□□□ -1.13
CUX1-212ENST00000547394 GAGE10A6NGK3 116 aa8.01□□□□□ -1.13
CUX1-212ENST00000547394 PLNP26678 52 aa8.01□□□□□ -1.13
CUX1-212ENST00000547394 TMEM170BQ5T4T1 132 aa8.01□□□□□ -1.13
CUX1-212ENST00000547394 ZNRF2Q8NHG8 242 aa8.01□□□□□ -1.13
CUX1-212ENST00000547394 TRAV2A0A0B4J234 112 aa8□□□□□ -1.13
CUX1-212ENST00000547394 PRADC1Q9BSG0 188 aa8□□□□□ -1.13
CUX1-212ENST00000547394 TNFRSF18Q9Y5U5 241 aa8□□□□□ -1.13
CUX1-212ENST00000547394 H3BUT2 72 aa8□□□□□ -1.13
CUX1-212ENST00000547394 I3L3M4 83 aa8□□□□□ -1.13
CUX1-212ENST00000547394 TRAV12-1A0A0B4J245 112 aa8□□□□□ -1.13
CUX1-212ENST00000547394 TRBV6-5A0A0K0K1A5 114 aa8□□□□□ -1.13
CUX1-212ENST00000547394 IGLV1-51P01701 117 aa8□□□□□ -1.13
CUX1-212ENST00000547394 SEC11AP67812 179 aa8□□□□□ -1.13
CUX1-212ENST00000547394 UFSP1Q6NVU6 142 aa8□□□□□ -1.13
CUX1-212ENST00000547394 FBN1P35555 2871 aaKnown RBP7.99□□□□□ -1.13
CUX1-212ENST00000547394 PLEKHB2Q96CS7 222 aa7.99□□□□□ -1.13
CUX1-212ENST00000547394 OR11H2Q8NH07 326 aa7.99□□□□□ -1.13
CUX1-212ENST00000547394 C19orf73Q9NVV2 129 aa7.99□□□□□ -1.13
CUX1-212ENST00000547394 TSPEAR-AS2P59090 65 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 PMVKQ15126 192 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 LINC00482Q8N8I6 264 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 C20orf203Q8NBC4 194 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 TRAV25A0A0B4J276 109 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 A0A0J9YXV3 536 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 A8MWV9 139 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 K7ERU9 68 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 GAGE7O76087 117 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 GAGE12FP0CL80 117 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 GAGE12GP0CL81 117 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 GAGE12IP0CL82 117 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 HSD52Q0P140 79 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 NOTCH1P46531 2555 aa7.98□□□□□ -1.13
CUX1-212ENST00000547394 LOC100131303A0A0U1RQF7 123 aa7.97□□□□□ -1.13
CUX1-212ENST00000547394 A6NDN8 102 aa7.97□□□□□ -1.13
CUX1-212ENST00000547394 C9orf118A6NHY6 69 aa7.97□□□□□ -1.13
CUX1-212ENST00000547394 SCGB2A2Q13296 93 aa7.97□□□□□ -1.13
CUX1-212ENST00000547394 NHP2Q9NX24 153 aaKnown RBP7.97□□□□□ -1.13
CUX1-212ENST00000547394 ZNF815PA8K554 130 aa7.96□□□□□ -1.13
CUX1-212ENST00000547394 LINC00467Q9BRT7 94 aa7.96□□□□□ -1.13
CUX1-212ENST00000547394 IGLV4-3A0A075B6K6 122 aa7.96□□□□□ -1.14
CUX1-212ENST00000547394 H3BRM9 83 aa7.96□□□□□ -1.14
CUX1-212ENST00000547394 RPL32P62910 135 aaKnown RBP7.96□□□□□ -1.14
CUX1-212ENST00000547394 GTF2H5Q6ZYL4 71 aa7.96□□□□□ -1.14
CUX1-212ENST00000547394 FAM104AQ969W3 186 aa7.96□□□□□ -1.14
CUX1-212ENST00000547394 HIST1H4GQ99525 98 aa7.96□□□□□ -1.14
CUX1-212ENST00000547394 A8MZ25 164 aa7.96□□□□□ -1.14
CUX1-212ENST00000547394 MYMXA0A1B0GTQ4 84 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 GAGE12JA6NER3 117 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 DEFB4AO15263 64 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 NDUFA7O95182 113 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 GAGE4Q13068 117 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 GAGE5Q13069 117 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 GAGE13Q4V321 117 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 SCGB1D4Q6XE38 83 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 COL6A5A8TX70 2615 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 TIMM17AQ99595 171 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 VCX2Q9H322 139 aa7.95□□□□□ -1.14
CUX1-212ENST00000547394 TRGV2A0A075B6R0 118 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 BEAN1Q3B7T3 259 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 SFTA2Q6UW10 78 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.94□□□□□ -1.14
CUX1-212ENST00000547394 SPXQ9BT56 116 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 CHCHD7Q9BUK0 85 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 K7EP34 96 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 RS1O15537 224 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 Q6ZUT4 128 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 SLC25A29Q8N8R3 303 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 TMEM141Q96I45 108 aa7.94□□□□□ -1.14
CUX1-212ENST00000547394 TRAV8-3A0A0A6YYJ7 113 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 PLAC8L1A1L4L8 177 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 E9PLD3 99 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 SIVA1O15304 175 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 LINC00694P0DN24 101 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 DEFB130BP0DP73 79 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 DEFB130AP0DP74 79 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 RHOHQ15669 191 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 TMEM263Q8WUH6 116 aaKnown RBP7.93□□□□□ -1.14
CUX1-212ENST00000547394 SPCS1Q9Y6A9 102 aa7.93□□□□□ -1.14
CUX1-212ENST00000547394 CEND1Q8N111 149 aa7.92□□□□□ -1.14
CUX1-212ENST00000547394 A0A1W2PPM0 123 aa7.92□□□□□ -1.14
CUX1-212ENST00000547394 CRLF1O75462 422 aa7.92□□□□□ -1.14
CUX1-212ENST00000547394 NDUFA11Q86Y39 141 aa7.92□□□□□ -1.14
CUX1-212ENST00000547394 ANK2Q01484 3957 aa7.92□□□□□ -1.14
CUX1-212ENST00000547394 RRN3P1Q2M238 152 aa7.92□□□□□ -1.14
CUX1-212ENST00000547394 CSNK1G2-AS1Q8NCQ2 148 aa7.92□□□□□ -1.14
CUX1-212ENST00000547394 ZNF22P17026 224 aaPredicted RBP7.91□□□□□ -1.14
CUX1-212ENST00000547394 IL17DQ8TAD2 202 aa7.91□□□□□ -1.14
CUX1-212ENST00000547394 RHODO00212 210 aa7.91□□□□□ -1.14
CUX1-212ENST00000547394 BAHCC1Q9P281 2608 aa7.9□□□□□ -1.14
CUX1-212ENST00000547394 SRSF9Q13242 221 aaKnown RBP eCLIP7.9□□□□□ -1.14
CUX1-212ENST00000547394 HIGD1BQ9P298 99 aa7.9□□□□□ -1.14
CUX1-212ENST00000547394 UBE2D4Q9Y2X8 147 aa7.9□□□□□ -1.14
CUX1-212ENST00000547394 SMIM13P0DJ93 91 aa7.9□□□□□ -1.15
CUX1-212ENST00000547394 NTM-AS1Q6ZSK4 140 aa7.9□□□□□ -1.15
CUX1-212ENST00000547394 IGKV3OR2-268A0A0C4DH90 116 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 G3V4G9 280 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 J3QQQ9 107 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 SPINK8P0C7L1 97 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 FABP2P12104 132 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms