RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 GAS8-AS1O95177 125 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 HTN1P15515 57 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 IGLL1P15814 213 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 APOC4P55056 127 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 ODF1Q14990 250 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 SLC25A34Q6PIV7 304 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 CSNK1G2-AS1Q8NCQ2 148 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 C18orf15Q96N68 181 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 MAST4O15021 2626 aa4.46□□□□□ -1.69
SYNE1-239ENST00000545694 F8VRH5 84 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 SPRY2O43597 315 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 IGKCP01834 107 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 GIG44P09565 113 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-239ENST00000545694 COX8AP10176 69 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 AZU1P20160 251 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 HNRNPA3P51991 378 aaKnown RBP4.46□□□□□ -1.7
SYNE1-239ENST00000545694 OR4C5Q8NGB2 326 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 C14orf144Q96I85 54 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 JPT2Q9H910 190 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 PYGO1Q9Y3Y4 419 aa4.46□□□□□ -1.7
SYNE1-239ENST00000545694 STAB1Q9NY15 2570 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 TRGV1A0A0A0MS02 117 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 TRBV6-4A0A1B0GX49 114 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 IGIPA6NJ69 53 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 H0Y8G0 127 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 CTAG1AP78358 180 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 RPL36AP83881 106 aaKnown RBP4.45□□□□□ -1.7
SYNE1-239ENST00000545694 PMVKQ15126 192 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 TMEM97Q5BJF2 176 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 DAZ4Q86SG3 579 aaKnown RBP4.45□□□□□ -1.7
SYNE1-239ENST00000545694 C20orf203Q8NBC4 194 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 NEXN-AS1Q8NBZ9 246 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 RPL36ALQ969Q0 106 aaKnown RBP4.45□□□□□ -1.7
SYNE1-239ENST00000545694 C2orf88Q9BSF0 95 aa4.45□□□□□ -1.7
SYNE1-239ENST00000545694 DAZ3Q9NR90 486 aaKnown RBP4.45□□□□□ -1.7
SYNE1-239ENST00000545694 TRBV7-3A0A075B6L6 115 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 IGHV3OR16-12A0A075B7B8 117 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 TEX48A0A1B0GUV7 120 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 LYRM9A8MSI8 78 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 K7EQD1 137 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 TSHBP01222 138 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 RPL35AP18077 110 aaKnown RBP4.44□□□□□ -1.7
SYNE1-239ENST00000545694 COTL1Q14019 142 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 HIST2H2BDQ6DRA6 164 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 C12orf54Q6X4T0 127 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 BOD1L2Q8IYS8 172 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 ATOH7Q8N100 152 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 LINC00612Q8N6U2 182 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 TIMM21Q9BVV7 248 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 SPANXA1Q9NS26 97 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 MRPL16Q9NX20 251 aaKnown RBP4.44□□□□□ -1.7
SYNE1-239ENST00000545694 TP53TG1Q9Y2A0 90 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 CHTOPQ9Y3Y2 248 aaKnown RBP4.44□□□□□ -1.7
SYNE1-239ENST00000545694 COL6A5A8TX70 2615 aa4.44□□□□□ -1.7
SYNE1-239ENST00000545694 TRRAPQ9Y4A5 3859 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 A8MZ25 164 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 H7C423 109 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 HERVK_113P61574 105 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 C3orf56Q8N813 242 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 BAALCQ8WXS3 180 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 GTSF1LQ9H1H1 148 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 NOP10Q9NPE3 64 aaKnown RBP4.43□□□□□ -1.7
SYNE1-239ENST00000545694 DKK2Q9UBU2 259 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 HHLA3Q9XRX5 114 aa4.43□□□□□ -1.7
SYNE1-239ENST00000545694 TRGV2A0A075B6R0 118 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 hDV102S1A0JD36 115 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 PLAC8L1A1L4L8 177 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 PRSS29PA6NIE9 313 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 MIFP14174 115 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 SEC11AP67812 179 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 MRPS36P82909 103 aaKnown RBP4.42□□□□□ -1.7
SYNE1-239ENST00000545694 MAJINQ3KP22 176 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 COL5A1-AS1Q5SY13 56 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 ZC2HC1BQ5TFG8 222 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 Q6ZTI0 123 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 NFE4Q86UQ8 179 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 PRADC1Q9BSG0 188 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 CST9LQ9H4G1 147 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 MRPL35Q9NZE8 188 aaKnown RBP4.42□□□□□ -1.7
SYNE1-239ENST00000545694 HIGD1BQ9P298 99 aa4.42□□□□□ -1.7
SYNE1-239ENST00000545694 CSDC2Q9Y534 153 aaKnown RBP4.42□□□□□ -1.7
SYNE1-239ENST00000545694 CMYA5Q8N3K9 4069 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 TRGV4A0A0C4DH28 118 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 C11orf86A6NJI1 115 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 P0DMU3 169 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 FAM231AP0DMU4 169 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 FAM231CP0DMU5 169 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 UBE2D3P61077 147 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 UBE2D2P62837 147 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 EGFEM1PQ0D2K5 195 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 KRTAP24-1Q3LI83 254 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 AMELXQ99217 191 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 SNHG12Q9BXW3 62 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 WFDC10AQ9H1F0 79 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 VCX2Q9H322 139 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 NBEAL2Q6ZNJ1 2754 aa4.41□□□□□ -1.7
SYNE1-239ENST00000545694 IGHV3-73A0A0B4J1V6 119 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 E9PLD3 99 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 FGF6P10767 208 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 ZNF25P17030 456 aaPredicted RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms