RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PRIMA1Q86XR5 153 aa10.36□□□□□ -0.75
VPS33A-209ENST00000544349 PRADC1Q9BSG0 188 aa10.36□□□□□ -0.75
VPS33A-209ENST00000544349 TRBV27A0A0K0K1C4 114 aa10.35□□□□□ -0.75
VPS33A-209ENST00000544349 M0R2P5 195 aa10.35□□□□□ -0.75
VPS33A-209ENST00000544349 NIPBLQ6KC79 2804 aaeCLIP10.35□□□□□ -0.75
VPS33A-209ENST00000544349 TRBV7-3A0A075B6L6 115 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 TRBV6-5A0A0K0K1A5 114 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 MYMXA0A1B0GTQ4 84 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 VCYO14598 125 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 AZU1P20160 251 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 PTH2Q96A98 100 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 C1QTNF4Q9BXJ3 329 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 E9PLD3 99 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 OCIAD2Q56VL3 154 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 PIK3CD-AS1Q5SR53 167 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 KIR2DL4Q99706 377 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 SPXQ9BT56 116 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 SPCS1Q9Y6A9 102 aa10.34□□□□□ -0.75
VPS33A-209ENST00000544349 GTF2H5Q6ZYL4 71 aa10.33□□□□□ -0.76
VPS33A-209ENST00000544349 PLEKHB2Q96CS7 222 aa10.33□□□□□ -0.76
VPS33A-209ENST00000544349 TENM1Q9UKZ4 2725 aa10.33□□□□□ -0.76
VPS33A-209ENST00000544349 RNF151Q2KHN1 245 aa10.33□□□□□ -0.76
VPS33A-209ENST00000544349 SAMD5Q5TGI4 173 aa10.33□□□□□ -0.76
VPS33A-209ENST00000544349 CSNK1G2-AS1Q8NCQ2 148 aa10.33□□□□□ -0.76
VPS33A-209ENST00000544349 OPRPNQ99935 248 aaPredicted RBP10.33□□□□□ -0.76
VPS33A-209ENST00000544349 ATRQ13535 2644 aa10.33□□□□□ -0.76
VPS33A-209ENST00000544349 HIST1H4GQ99525 98 aa10.32□□□□□ -0.76
VPS33A-209ENST00000544349 WIPF1O43516 503 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 PMVKQ15126 192 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 TAL2Q16559 108 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 C3orf56Q8N813 242 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 TIMM17AQ99595 171 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 IGHV3-73A0A0B4J1V6 119 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 A8MWV9 139 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 P0DMU3 169 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 FAM231AP0DMU4 169 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 FAM231CP0DMU5 169 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 TSPEAR-AS2P59090 65 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 ZNRF2Q8NHG8 242 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 IL17DQ8TAD2 202 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 TMEM263Q8WUH6 116 aaKnown RBP10.31□□□□□ -0.76
VPS33A-209ENST00000544349 CBY1Q9Y3M2 126 aa10.31□□□□□ -0.76
VPS33A-209ENST00000544349 ZNF815PA8K554 130 aa10.3□□□□□ -0.76
VPS33A-209ENST00000544349 FABP2P12104 132 aa10.3□□□□□ -0.76
VPS33A-209ENST00000544349 C12orf74Q32Q52 190 aa10.3□□□□□ -0.76
VPS33A-209ENST00000544349 SHISA2Q6UWI4 295 aa10.3□□□□□ -0.76
VPS33A-209ENST00000544349 TMEM141Q96I45 108 aa10.3□□□□□ -0.76
VPS33A-209ENST00000544349 MRPL16Q9NX20 251 aaKnown RBP10.3□□□□□ -0.76
VPS33A-209ENST00000544349 NOTCH3Q9UM47 2321 aa10.29□□□□□ -0.76
VPS33A-209ENST00000544349 IGLL5B9A064 214 aa10.28□□□□□ -0.76
VPS33A-209ENST00000544349 CFAP126Q5VTH2 177 aa10.28□□□□□ -0.76
VPS33A-209ENST00000544349 Q9UF83 564 aa10.28□□□□□ -0.76
VPS33A-209ENST00000544349 RHOHQ15669 191 aa10.27□□□□□ -0.77
VPS33A-209ENST00000544349 C21orf62-AS1Q17RA5 79 aa10.27□□□□□ -0.77
VPS33A-209ENST00000544349 OR5A1Q8NGJ0 315 aa10.27□□□□□ -0.77
VPS33A-209ENST00000544349 C16orf74Q96GX8 76 aa10.27□□□□□ -0.77
VPS33A-209ENST00000544349 VWFP04275 2813 aa10.27□□□□□ -0.77
VPS33A-209ENST00000544349 RS1O15537 224 aa10.27□□□□□ -0.77
VPS33A-209ENST00000544349 C20orf203Q8NBC4 194 aa10.27□□□□□ -0.77
VPS33A-209ENST00000544349 EDA2RQ9HAV5 297 aa10.27□□□□□ -0.77
VPS33A-209ENST00000544349 PLAC8L1A1L4L8 177 aa10.26□□□□□ -0.77
VPS33A-209ENST00000544349 LINC01549A6NIU2 74 aa10.26□□□□□ -0.77
VPS33A-209ENST00000544349 RRN3P1Q2M238 152 aa10.26□□□□□ -0.77
VPS33A-209ENST00000544349 TMEM170BQ5T4T1 132 aa10.26□□□□□ -0.77
VPS33A-209ENST00000544349 ZNF479Q96JC4 524 aa10.26□□□□□ -0.77
VPS33A-209ENST00000544349 TRGV1A0A0A0MS02 117 aa10.25□□□□□ -0.77
VPS33A-209ENST00000544349 A0A1B0GWB2 263 aa10.25□□□□□ -0.77
VPS33A-209ENST00000544349 I3L3M4 83 aa10.25□□□□□ -0.77
VPS33A-209ENST00000544349 DAZ2Q13117 558 aaKnown RBP10.25□□□□□ -0.77
VPS33A-209ENST00000544349 SCGB1D4Q6XE38 83 aa10.25□□□□□ -0.77
VPS33A-209ENST00000544349 Q6ZSN1 163 aa10.25□□□□□ -0.77
VPS33A-209ENST00000544349 RHODO00212 210 aa10.25□□□□□ -0.77
VPS33A-209ENST00000544349 AMELXQ99217 191 aa10.25□□□□□ -0.77
VPS33A-209ENST00000544349 HERVK_113P61574 105 aa10.24□□□□□ -0.77
VPS33A-209ENST00000544349 PAPPA-AS1Q5QFB9 102 aa10.24□□□□□ -0.77
VPS33A-209ENST00000544349 FAM104AQ969W3 186 aa10.24□□□□□ -0.77
VPS33A-209ENST00000544349 NOP10Q9NPE3 64 aaKnown RBP10.24□□□□□ -0.77
VPS33A-209ENST00000544349 FBN1P35555 2871 aaKnown RBP10.24□□□□□ -0.77
VPS33A-209ENST00000544349 IGLV4-3A0A075B6K6 122 aa10.24□□□□□ -0.77
VPS33A-209ENST00000544349 A0A0J9YY99 117 aa10.24□□□□□ -0.77
VPS33A-209ENST00000544349 Q6ZTI0 123 aa10.24□□□□□ -0.77
VPS33A-209ENST00000544349 OXLD1Q5BKU9 147 aa10.23□□□□□ -0.77
VPS33A-209ENST00000544349 NFE4Q86UQ8 179 aa10.23□□□□□ -0.77
VPS33A-209ENST00000544349 OVOL2Q9BRP0 275 aa10.23□□□□□ -0.77
VPS33A-209ENST00000544349 KIR2DL5BQ8NHK3 375 aa10.22□□□□□ -0.77
VPS33A-209ENST00000544349 TRRAPQ9Y4A5 3859 aa10.22□□□□□ -0.77
VPS33A-209ENST00000544349 IGHV3-53P01767 116 aa10.22□□□□□ -0.77
VPS33A-209ENST00000544349 PCP4P48539 62 aa10.22□□□□□ -0.77
VPS33A-209ENST00000544349 CEMP1Q6PRD7 247 aaPredicted RBP10.22□□□□□ -0.77
VPS33A-209ENST00000544349 VPS25Q9BRG1 176 aa10.22□□□□□ -0.77
VPS33A-209ENST00000544349 IGHV3-64A0A075B6Q5 118 aa10.21□□□□□ -0.77
VPS33A-209ENST00000544349 A0A0J9YXV3 536 aa10.21□□□□□ -0.77
VPS33A-209ENST00000544349 K7ERU9 68 aa10.21□□□□□ -0.77
VPS33A-209ENST00000544349 ZNF22P17026 224 aaPredicted RBP10.21□□□□□ -0.77
VPS33A-209ENST00000544349 APOC4P55056 127 aa10.21□□□□□ -0.77
VPS33A-209ENST00000544349 TMEM223A0PJW6 202 aa10.21□□□□□ -0.78
VPS33A-209ENST00000544349 J3QQQ9 107 aa10.21□□□□□ -0.78
VPS33A-209ENST00000544349 RNASE13Q5GAN3 156 aaKnown RBP10.21□□□□□ -0.78
VPS33A-209ENST00000544349 X6R8D5 127 aa10.21□□□□□ -0.78
VPS33A-209ENST00000544349 TRAV4A0A0B4J268 109 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms