RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 I3L3M4 83 aa7.96□□□□□ -1.14
YBX3-213ENST00000542641 COTL1Q14019 142 aa7.96□□□□□ -1.14
YBX3-213ENST00000542641 TRBV27A0A0K0K1C4 114 aa7.95□□□□□ -1.14
YBX3-213ENST00000542641 LOC389332A0A1B0GUA5 103 aa7.95□□□□□ -1.14
YBX3-213ENST00000542641 RAB5AP20339 215 aa7.95□□□□□ -1.14
YBX3-213ENST00000542641 NTM-AS1Q6ZSK4 140 aa7.95□□□□□ -1.14
YBX3-213ENST00000542641 ALKBH7Q9BT30 221 aaPredicted RBP7.95□□□□□ -1.14
YBX3-213ENST00000542641 UPK3BQ9BT76 320 aa7.95□□□□□ -1.14
YBX3-213ENST00000542641 MAP1LC3AQ9H492 121 aa7.95□□□□□ -1.14
YBX3-213ENST00000542641 TRBV25-1A0A075B6N4 114 aa7.94□□□□□ -1.14
YBX3-213ENST00000542641 IGHV1-24A0A0C4DH33 117 aa7.94□□□□□ -1.14
YBX3-213ENST00000542641 RPL32P62910 135 aaKnown RBP7.94□□□□□ -1.14
YBX3-213ENST00000542641 WFDC10BQ8IUB3 73 aa7.94□□□□□ -1.14
YBX3-213ENST00000542641 KIR2DL4Q99706 377 aa7.94□□□□□ -1.14
YBX3-213ENST00000542641 SMIM2Q9BVW6 85 aa7.94□□□□□ -1.14
YBX3-213ENST00000542641 Q9H8V8 135 aa7.94□□□□□ -1.14
YBX3-213ENST00000542641 VPS13DQ5THJ4 4388 aa7.94□□□□□ -1.14
YBX3-213ENST00000542641 ALMS1Q8TCU4 4167 aa7.94□□□□□ -1.14
YBX3-213ENST00000542641 DNAH1Q9P2D7 4330 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 LCE6AA0A183 80 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 PRSS47A8MTI9 375 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 SIVA1O15304 175 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 TSHBP01222 138 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 FCER1GP30273 86 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 AMTP48728 403 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 IQCJQ1A5X6 159 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 CHCHD5Q9BSY4 110 aa7.93□□□□□ -1.14
YBX3-213ENST00000542641 TMEM262E9PQX1 116 aa7.92□□□□□ -1.14
YBX3-213ENST00000542641 TRGC2P03986 189 aa7.92□□□□□ -1.14
YBX3-213ENST00000542641 TMEM243Q9BU79 118 aa7.92□□□□□ -1.14
YBX3-213ENST00000542641 IGLV2-18A0A075B6J9 118 aa7.91□□□□□ -1.14
YBX3-213ENST00000542641 TCAPO15273 167 aa7.91□□□□□ -1.14
YBX3-213ENST00000542641 IFI27P40305 119 aaPredicted RBP7.91□□□□□ -1.14
YBX3-213ENST00000542641 Q8N8P6 123 aa7.91□□□□□ -1.14
YBX3-213ENST00000542641 PRSS3P2Q8NHM4 247 aa7.91□□□□□ -1.14
YBX3-213ENST00000542641 A0A087WX48 190 aa7.9□□□□□ -1.14
YBX3-213ENST00000542641 UBE2L6O14933 153 aa7.9□□□□□ -1.14
YBX3-213ENST00000542641 DNAH10OSP0CZ25 163 aa7.9□□□□□ -1.14
YBX3-213ENST00000542641 PKIAP61925 76 aa7.9□□□□□ -1.14
YBX3-213ENST00000542641 GAGE6Q13070 117 aa7.9□□□□□ -1.14
YBX3-213ENST00000542641 NIT1Q86X76 327 aa7.9□□□□□ -1.14
YBX3-213ENST00000542641 CHCHD7Q9BUK0 85 aa7.9□□□□□ -1.14
YBX3-213ENST00000542641 NXT2Q9NPJ8 142 aaKnown RBP7.9□□□□□ -1.14
YBX3-213ENST00000542641 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.89□□□□□ -1.15
YBX3-213ENST00000542641 TRAV9-2A0A087WT02 112 aa7.89□□□□□ -1.15
YBX3-213ENST00000542641 IGKV2-29A2NJV5 120 aaPredicted RBP7.89□□□□□ -1.15
YBX3-213ENST00000542641 IGHV3-30P01768 117 aa7.89□□□□□ -1.15
YBX3-213ENST00000542641 IGHV3-33P01772 117 aa7.89□□□□□ -1.15
YBX3-213ENST00000542641 IGHV3-30-3P0DP02 117 aa7.89□□□□□ -1.15
YBX3-213ENST00000542641 IGHV3-30-5P0DP03 117 aa7.89□□□□□ -1.15
YBX3-213ENST00000542641 ESDP10768 282 aa7.89□□□□□ -1.15
YBX3-213ENST00000542641 LINC01556Q5JQF7 62 aa7.89□□□□□ -1.15
YBX3-213ENST00000542641 C18orf32Q8TCD1 76 aa7.89□□□□□ -1.15
YBX3-213ENST00000542641 K7EMI3 77 aa7.88□□□□□ -1.15
YBX3-213ENST00000542641 M0R2N4 97 aa7.88□□□□□ -1.15
YBX3-213ENST00000542641 Q8N3U1 123 aa7.88□□□□□ -1.15
YBX3-213ENST00000542641 SACSQ9NZJ4 4579 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 NBDYA0A0U1RRE5 68 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 H7C423 109 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 LAGE3Q14657 143 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 ORMDL2Q53FV1 153 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 MPV17L2Q567V2 206 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 TTC32Q5I0X7 151 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 AMMECR1LQ6DCA0 310 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 FA2HQ7L5A8 372 aa7.87□□□□□ -1.15
YBX3-213ENST00000542641 K7EP13 123 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 FGF6P10767 208 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 RAB5BP61020 215 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 RBX1P62877 108 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 RNASEKQ6P5S7 137 aaKnown RBP7.86□□□□□ -1.15
YBX3-213ENST00000542641 C10orf126Q8N4M7 172 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 Q8N976 141 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 C20orf203Q8NBC4 194 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 TMEM18Q96B42 140 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 KMT2AQ03164 3969 aa7.86□□□□□ -1.15
YBX3-213ENST00000542641 A0A1B0GUV1 79 aa7.85□□□□□ -1.15
YBX3-213ENST00000542641 ANGP03950 147 aaKnown RBP7.85□□□□□ -1.15
YBX3-213ENST00000542641 LINC00614P0C842 121 aa7.85□□□□□ -1.15
YBX3-213ENST00000542641 SMAGPQ0VAQ4 97 aa7.85□□□□□ -1.15
YBX3-213ENST00000542641 KMT2CQ8NEZ4 4911 aaKnown RBP7.85□□□□□ -1.15
YBX3-213ENST00000542641 DNAH6Q9C0G6 4158 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 IGLV4-60A0A075B6I1 120 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 LINC01546A6NGU7 62 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 ZNF25P17030 456 aaPredicted RBP7.84□□□□□ -1.15
YBX3-213ENST00000542641 BTF3P20290 206 aaKnown RBP7.84□□□□□ -1.15
YBX3-213ENST00000542641 G0S2P27469 103 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 RPL39P62891 51 aaKnown RBP7.84□□□□□ -1.15
YBX3-213ENST00000542641 Q0VG73 95 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 DGAT2L7PQ6IED9 249 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 Q6ZR54 194 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 BAGE3Q86Y29 109 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 TMEM101Q96IK0 257 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 KRTAP1-5Q9BYS1 174 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 AP5S1Q9NUS5 200 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 KLK12Q9UKR0 248 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 HYDINQ4G0P3 5121 aa7.84□□□□□ -1.15
YBX3-213ENST00000542641 IBA57-AS1B1ANH7 110 aa7.83□□□□□ -1.16
YBX3-213ENST00000542641 C2orf66Q6UXQ4 117 aa7.83□□□□□ -1.16
YBX3-213ENST00000542641 MRPL52Q86TS9 123 aaKnown RBP7.83□□□□□ -1.16
YBX3-213ENST00000542641 OR5A1Q8NGJ0 315 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 169 ms