RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 A0A1B0GUT8 65 aa12.46□□□□□ -0.41
CLIP1-211ENST00000539080 HIGD1CA8MV81 97 aa12.46□□□□□ -0.41
CLIP1-211ENST00000539080 AMTP48728 403 aa12.46□□□□□ -0.41
CLIP1-211ENST00000539080 TMEM241Q24JQ0 296 aa12.46□□□□□ -0.41
CLIP1-211ENST00000539080 UBE2L6O14933 153 aa12.45□□□□□ -0.42
CLIP1-211ENST00000539080 NCR2O95944 276 aa12.45□□□□□ -0.42
CLIP1-211ENST00000539080 REG3AQ06141 175 aa12.45□□□□□ -0.42
CLIP1-211ENST00000539080 PEA15Q15121 130 aa12.45□□□□□ -0.42
CLIP1-211ENST00000539080 Q6ZSA8 131 aa12.45□□□□□ -0.42
CLIP1-211ENST00000539080 ISOC2Q96AB3 205 aa12.45□□□□□ -0.42
CLIP1-211ENST00000539080 TRAV8-4A0A0B4J246 113 aa12.44□□□□□ -0.42
CLIP1-211ENST00000539080 C20orf203Q8NBC4 194 aa12.44□□□□□ -0.42
CLIP1-211ENST00000539080 RPL39LQ96EH5 51 aaKnown RBP12.44□□□□□ -0.42
CLIP1-211ENST00000539080 TMEM191AQ9H0A3 160 aa12.44□□□□□ -0.42
CLIP1-211ENST00000539080 V9GYV3 84 aa12.44□□□□□ -0.42
CLIP1-211ENST00000539080 HLA-DQA1P01909 254 aa12.43□□□□□ -0.42
CLIP1-211ENST00000539080 RPL23P62829 140 aaKnown RBP12.43□□□□□ -0.42
CLIP1-211ENST00000539080 Q5VSD8 79 aa12.43□□□□□ -0.42
CLIP1-211ENST00000539080 CLPSL2Q6UWE3 100 aa12.43□□□□□ -0.42
CLIP1-211ENST00000539080 FAM30AQ9NZY2 134 aa12.43□□□□□ -0.42
CLIP1-211ENST00000539080 NAT8Q9UHE5 227 aa12.43□□□□□ -0.42
CLIP1-211ENST00000539080 IGLV4-60A0A075B6I1 120 aa12.42□□□□□ -0.42
CLIP1-211ENST00000539080 TRBV6-5A0A0K0K1A5 114 aa12.42□□□□□ -0.42
CLIP1-211ENST00000539080 SDHAF1A6NFY7 115 aa12.42□□□□□ -0.42
CLIP1-211ENST00000539080 KRTAP26-1Q6PEX3 210 aa12.42□□□□□ -0.42
CLIP1-211ENST00000539080 C9JQL5 133 aa12.41□□□□□ -0.42
CLIP1-211ENST00000539080 USP17L23D6RBM5 183 aa12.41□□□□□ -0.42
CLIP1-211ENST00000539080 H7C423 109 aa12.41□□□□□ -0.42
CLIP1-211ENST00000539080 FAM229AH3BQW9 127 aa12.4□□□□□ -0.42
CLIP1-211ENST00000539080 RIGQ13278 110 aa12.4□□□□□ -0.42
CLIP1-211ENST00000539080 ADIRFQ15847 76 aa12.4□□□□□ -0.42
CLIP1-211ENST00000539080 DEFB104AQ8WTQ1 72 aa12.4□□□□□ -0.42
CLIP1-211ENST00000539080 MRAP2Q96G30 205 aa12.4□□□□□ -0.42
CLIP1-211ENST00000539080 NAT8BQ9UHF3 227 aa12.4□□□□□ -0.42
CLIP1-211ENST00000539080 I3L3M4 83 aa12.39□□□□□ -0.43
CLIP1-211ENST00000539080 APCSP02743 223 aa12.39□□□□□ -0.43
CLIP1-211ENST00000539080 SMR3BP02814 79 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-211ENST00000539080 HAMPP81172 84 aa12.39□□□□□ -0.43
CLIP1-211ENST00000539080 SRSF3P84103 164 aaKnown RBP12.39□□□□□ -0.43
CLIP1-211ENST00000539080 NUP35Q8NFH5 326 aa12.39□□□□□ -0.43
CLIP1-211ENST00000539080 RAB4AP20338 218 aa12.38□□□□□ -0.43
CLIP1-211ENST00000539080 DGAT2L7PQ6IED9 249 aa12.38□□□□□ -0.43
CLIP1-211ENST00000539080 RNF185Q96GF1 192 aa12.38□□□□□ -0.43
CLIP1-211ENST00000539080 ST20Q9HBF5 79 aa12.38□□□□□ -0.43
CLIP1-211ENST00000539080 DNAH8Q96JB1 4490 aa12.37□□□□□ -0.43
CLIP1-211ENST00000539080 IGLV10-54A0A075B6I4 117 aa12.37□□□□□ -0.43
CLIP1-211ENST00000539080 PMCHP20382 165 aa12.37□□□□□ -0.43
CLIP1-211ENST00000539080 LINC01620Q4KN68 170 aa12.37□□□□□ -0.43
CLIP1-211ENST00000539080 CLRN3Q8NCR9 226 aa12.37□□□□□ -0.43
CLIP1-211ENST00000539080 SMIM27A0A1W2PRY6 76 aa12.36□□□□□ -0.43
CLIP1-211ENST00000539080 PRSS1P07477 247 aa12.36□□□□□ -0.43
CLIP1-211ENST00000539080 AMMECR1LQ6DCA0 310 aa12.36□□□□□ -0.43
CLIP1-211ENST00000539080 AMN1Q8IY45 258 aa12.36□□□□□ -0.43
CLIP1-211ENST00000539080 PPP1R17O96001 155 aa12.35□□□□□ -0.43
CLIP1-211ENST00000539080 INAFM2P0DMQ5 153 aa12.35□□□□□ -0.43
CLIP1-211ENST00000539080 ZNF25P17030 456 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-211ENST00000539080 TRBV27A0A0K0K1C4 114 aa12.34□□□□□ -0.43
CLIP1-211ENST00000539080 A0A1B0GW15 77 aa12.34□□□□□ -0.43
CLIP1-211ENST00000539080 GAS8-AS1O95177 125 aa12.34□□□□□ -0.43
CLIP1-211ENST00000539080 FGF6P10767 208 aa12.34□□□□□ -0.43
CLIP1-211ENST00000539080 POLR2KP53803 58 aaKnown RBP12.34□□□□□ -0.43
CLIP1-211ENST00000539080 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-211ENST00000539080 IGKV2-29A2NJV5 120 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-211ENST00000539080 ESDP10768 282 aa12.33□□□□□ -0.44
CLIP1-211ENST00000539080 RPS10P46783 165 aaKnown RBP12.33□□□□□ -0.44
CLIP1-211ENST00000539080 RNASEKQ6P5S7 137 aaKnown RBP12.33□□□□□ -0.44
CLIP1-211ENST00000539080 CHAC1Q9BUX1 264 aa12.33□□□□□ -0.44
CLIP1-211ENST00000539080 FAT1Q14517 4588 aa12.32□□□□□ -0.44
CLIP1-211ENST00000539080 TSHBP01222 138 aa12.32□□□□□ -0.44
CLIP1-211ENST00000539080 SCXQ7RTU7 201 aa12.32□□□□□ -0.44
CLIP1-211ENST00000539080 C9orf163Q8N9P6 203 aa12.32□□□□□ -0.44
CLIP1-211ENST00000539080 FAM104BQ5XKR9 115 aa12.31□□□□□ -0.44
CLIP1-211ENST00000539080 BTF3L4Q96K17 158 aa12.31□□□□□ -0.44
CLIP1-211ENST00000539080 TMEM242Q9NWH2 141 aa12.31□□□□□ -0.44
CLIP1-211ENST00000539080 VPS13BQ7Z7G8 4022 aa12.3□□□□□ -0.44
CLIP1-211ENST00000539080 VCYO14598 125 aa12.3□□□□□ -0.44
CLIP1-211ENST00000539080 CNBPP62633 177 aaKnown RBP12.3□□□□□ -0.44
CLIP1-211ENST00000539080 TMEM101Q96IK0 257 aa12.3□□□□□ -0.44
CLIP1-211ENST00000539080 hDV102S1A0JD36 115 aa12.29□□□□□ -0.44
CLIP1-211ENST00000539080 LINC00862A6NCI5 91 aa12.29□□□□□ -0.44
CLIP1-211ENST00000539080 PPP1R2P9O14990 202 aa12.29□□□□□ -0.44
CLIP1-211ENST00000539080 PLA2G1BP04054 148 aaKnown RBP12.29□□□□□ -0.44
CLIP1-211ENST00000539080 S100A8P05109 93 aa12.29□□□□□ -0.44
CLIP1-211ENST00000539080 RAB14P61106 215 aa12.29□□□□□ -0.44
CLIP1-211ENST00000539080 SUMO2P61956 95 aaKnown RBP12.29□□□□□ -0.44
CLIP1-211ENST00000539080 NRACQ8N912 160 aa12.29□□□□□ -0.44
CLIP1-211ENST00000539080 OR5A1Q8NGJ0 315 aa12.29□□□□□ -0.44
CLIP1-211ENST00000539080 SMKR1H3BMG3 65 aa12.28□□□□□ -0.44
CLIP1-211ENST00000539080 CAMPP49913 170 aa12.28□□□□□ -0.44
CLIP1-211ENST00000539080 CFAP161Q6P656 301 aa12.28□□□□□ -0.44
CLIP1-211ENST00000539080 MRPL52Q86TS9 123 aaKnown RBP12.28□□□□□ -0.44
CLIP1-211ENST00000539080 LINC00528Q8N1L1 170 aa12.28□□□□□ -0.44
CLIP1-211ENST00000539080 AP5S1Q9NUS5 200 aa12.28□□□□□ -0.44
CLIP1-211ENST00000539080 IGKV3OR2-268A0A0C4DH90 116 aa12.27□□□□□ -0.45
CLIP1-211ENST00000539080 C7orf77A4D0Y5 90 aa12.27□□□□□ -0.45
CLIP1-211ENST00000539080 GAGE12HA6NDE8 117 aa12.27□□□□□ -0.45
CLIP1-211ENST00000539080 HBBP68871 147 aa12.27□□□□□ -0.45
CLIP1-211ENST00000539080 MRPL51Q4U2R6 128 aaKnown RBP12.27□□□□□ -0.45
CLIP1-211ENST00000539080 CIRBP-AS1Q8TBR5 109 aa12.27□□□□□ -0.45
CLIP1-211ENST00000539080 CHCHD10Q8WYQ3 142 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms