RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 TMEM263Q8WUH6 116 aaKnown RBP11.74□□□□□ -0.53
SNRNP35-204ENST00000527158 KIR2DL4Q99706 377 aa11.74□□□□□ -0.53
SNRNP35-204ENST00000527158 MRPL16Q9NX20 251 aaKnown RBP11.74□□□□□ -0.53
SNRNP35-204ENST00000527158 NHP2Q9NX24 153 aaKnown RBP11.74□□□□□ -0.53
SNRNP35-204ENST00000527158 SDHAF1A6NFY7 115 aa11.73□□□□□ -0.53
SNRNP35-204ENST00000527158 E9PLD3 99 aa11.73□□□□□ -0.53
SNRNP35-204ENST00000527158 HIST1H4GQ99525 98 aa11.73□□□□□ -0.53
SNRNP35-204ENST00000527158 IGHV3-73A0A0B4J1V6 119 aa11.72□□□□□ -0.53
SNRNP35-204ENST00000527158 CFAP126Q5VTH2 177 aa11.72□□□□□ -0.53
SNRNP35-204ENST00000527158 TTTY13Q9BZ97 58 aa11.72□□□□□ -0.53
SNRNP35-204ENST00000527158 RHODO00212 210 aa11.72□□□□□ -0.53
SNRNP35-204ENST00000527158 MAPKAPK5-AS1Q8N8E1 139 aa11.72□□□□□ -0.53
SNRNP35-204ENST00000527158 CYSLTR1Q9Y271 337 aa11.72□□□□□ -0.53
SNRNP35-204ENST00000527158 TRBV27A0A0K0K1C4 114 aa11.71□□□□□ -0.53
SNRNP35-204ENST00000527158 WFDC9Q8NEX5 89 aa11.71□□□□□ -0.53
SNRNP35-204ENST00000527158 BAALCQ8WXS3 180 aa11.71□□□□□ -0.53
SNRNP35-204ENST00000527158 NAA38Q9BRA0 125 aaKnown RBP11.71□□□□□ -0.53
SNRNP35-204ENST00000527158 EDA2RQ9HAV5 297 aa11.71□□□□□ -0.53
SNRNP35-204ENST00000527158 A0A1B0GWB2 263 aa11.71□□□□□ -0.54
SNRNP35-204ENST00000527158 C12orf74Q32Q52 190 aa11.71□□□□□ -0.54
SNRNP35-204ENST00000527158 CSNK1G2-AS1Q8NCQ2 148 aa11.71□□□□□ -0.54
SNRNP35-204ENST00000527158 IL17DQ8TAD2 202 aa11.71□□□□□ -0.54
SNRNP35-204ENST00000527158 TRBV7-3A0A075B6L6 115 aa11.7□□□□□ -0.54
SNRNP35-204ENST00000527158 IGLL5B9A064 214 aa11.7□□□□□ -0.54
SNRNP35-204ENST00000527158 F8W1H4 67 aa11.7□□□□□ -0.54
SNRNP35-204ENST00000527158 C16orf74Q96GX8 76 aa11.7□□□□□ -0.54
SNRNP35-204ENST00000527158 TMEM141Q96I45 108 aa11.7□□□□□ -0.54
SNRNP35-204ENST00000527158 TRGV1A0A0A0MS02 117 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 TMEM238LA0A1B0GVL6 79 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 A6NJY4 79 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 RS1O15537 224 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 HERVK_113P61574 105 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 KRTAP24-1Q3LI83 254 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 ZNF479Q96JC4 524 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 JMJD1CQ15652 2540 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 RRN3P1Q2M238 152 aa11.69□□□□□ -0.54
SNRNP35-204ENST00000527158 PRSS29PA6NIE9 313 aa11.68□□□□□ -0.54
SNRNP35-204ENST00000527158 ZFP2Q6ZN57 461 aa11.68□□□□□ -0.54
SNRNP35-204ENST00000527158 I3L3M4 83 aa11.67□□□□□ -0.54
SNRNP35-204ENST00000527158 K7ERJ3 54 aa11.67□□□□□ -0.54
SNRNP35-204ENST00000527158 DAZ2Q13117 558 aaKnown RBP11.67□□□□□ -0.54
SNRNP35-204ENST00000527158 TIMM17AQ99595 171 aa11.67□□□□□ -0.54
SNRNP35-204ENST00000527158 TNFRSF18Q9Y5U5 241 aa11.67□□□□□ -0.54
SNRNP35-204ENST00000527158 J3QR89 54 aa11.67□□□□□ -0.54
SNRNP35-204ENST00000527158 NOP10Q9NPE3 64 aaKnown RBP11.67□□□□□ -0.54
SNRNP35-204ENST00000527158 TEP1Q99973 2627 aaKnown RBP11.66□□□□□ -0.54
SNRNP35-204ENST00000527158 CYSRT1A8MQ03 144 aa11.66□□□□□ -0.54
SNRNP35-204ENST00000527158 IGHV3-53P01767 116 aa11.66□□□□□ -0.54
SNRNP35-204ENST00000527158 PRADC1Q9BSG0 188 aa11.66□□□□□ -0.54
SNRNP35-204ENST00000527158 TENM1Q9UKZ4 2725 aa11.66□□□□□ -0.54
SNRNP35-204ENST00000527158 ATRQ13535 2644 aa11.66□□□□□ -0.54
SNRNP35-204ENST00000527158 RIPPLY3P57055 190 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 PMVKQ15126 192 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 C3orf56Q8N813 242 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 BAHCC1Q9P281 2608 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 P0DMU3 169 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 FAM231AP0DMU4 169 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 FAM231CP0DMU5 169 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 RHOHQ15669 191 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 Q6ZSN1 163 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 Q6ZTI0 123 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 DEFB104AQ8WTQ1 72 aa11.65□□□□□ -0.54
SNRNP35-204ENST00000527158 WIPF1O43516 503 aa11.64□□□□□ -0.55
SNRNP35-204ENST00000527158 DNAJC30Q96LL9 226 aa11.64□□□□□ -0.55
SNRNP35-204ENST00000527158 TP53TG1Q9Y2A0 90 aa11.64□□□□□ -0.55
SNRNP35-204ENST00000527158 IGIPA6NJ69 53 aa11.64□□□□□ -0.55
SNRNP35-204ENST00000527158 ZNF815PA8K554 130 aa11.64□□□□□ -0.55
SNRNP35-204ENST00000527158 TRAV4A0A0B4J268 109 aa11.63□□□□□ -0.55
SNRNP35-204ENST00000527158 PLAC8L1A1L4L8 177 aa11.63□□□□□ -0.55
SNRNP35-204ENST00000527158 OVOL2Q9BRP0 275 aa11.63□□□□□ -0.55
SNRNP35-204ENST00000527158 TSHBP01222 138 aa11.62□□□□□ -0.55
SNRNP35-204ENST00000527158 LYRM7Q5U5X0 104 aa11.62□□□□□ -0.55
SNRNP35-204ENST00000527158 SCGB1D4Q6XE38 83 aa11.62□□□□□ -0.55
SNRNP35-204ENST00000527158 RPL24P83731 157 aaKnown RBP11.62□□□□□ -0.55
SNRNP35-204ENST00000527158 SHISA2Q6UWI4 295 aa11.62□□□□□ -0.55
SNRNP35-204ENST00000527158 TRGV2A0A075B6R0 118 aa11.61□□□□□ -0.55
SNRNP35-204ENST00000527158 C11orf86A6NJI1 115 aa11.61□□□□□ -0.55
SNRNP35-204ENST00000527158 KIR2DL5BQ8NHK3 375 aa11.61□□□□□ -0.55
SNRNP35-204ENST00000527158 APOC4P55056 127 aa11.61□□□□□ -0.55
SNRNP35-204ENST00000527158 VWFP04275 2813 aa11.61□□□□□ -0.55
SNRNP35-204ENST00000527158 NOTCH3Q9UM47 2321 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 GAGE7O76087 117 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 GAGE12FP0CL80 117 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 GAGE12GP0CL81 117 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 GAGE12IP0CL82 117 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 RPL39P62891 51 aaKnown RBP11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 SPANXB1Q9NS25 103 aaPredicted RBP11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 IGLV4-69A0A075B6H9 119 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 SMIM9A6NGZ8 99 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 CIDEAO60543 219 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 SRSF9Q13242 221 aaKnown RBP eCLIP11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 GAGE13Q4V321 117 aa11.6□□□□□ -0.55
SNRNP35-204ENST00000527158 PRIMA1Q86XR5 153 aa11.59□□□□□ -0.55
SNRNP35-204ENST00000527158 C20orf203Q8NBC4 194 aa11.59□□□□□ -0.55
SNRNP35-204ENST00000527158 Q9UF83 564 aa11.59□□□□□ -0.55
SNRNP35-204ENST00000527158 NACAE9PAV3 2078 aa11.59□□□□□ -0.55
SNRNP35-204ENST00000527158 TEX48A0A1B0GUV7 120 aa11.58□□□□□ -0.56
SNRNP35-204ENST00000527158 UBE2D1P51668 147 aa11.58□□□□□ -0.56
SNRNP35-204ENST00000527158 EMP1P54849 157 aa11.58□□□□□ -0.56
SNRNP35-204ENST00000527158 TRBV10-1A0A0K0K1A3 114 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms