RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ARPC5O15511 151 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 ZNF737O75373 536 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 NDUFC2O95298 119 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 IGKV1-16P04430 117 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 SLC25A4P12235 298 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 FABP4P15090 132 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 HIST1H1DP16402 221 aaKnown RBP1.73□□□□□ -2.13
CD44-223ENST00000526553 GNG4P50150 75 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 CKS1BP61024 79 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 DYNLT1P63172 113 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 XAF1Q6GPH4 301 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 OR2T2Q6IF00 324 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 MRPL54Q6P161 138 aaKnown RBP1.73□□□□□ -2.13
CD44-223ENST00000526553 C7orf65Q6ZTY9 151 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 RPS19BP1Q86WX3 136 aaKnown RBP1.73□□□□□ -2.13
CD44-223ENST00000526553 SLC30A7Q8NEW0 376 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 RAB37Q96AX2 223 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 VAMP8Q9BV40 100 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 DPY30Q9C005 99 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 MAP1LC3BQ9GZQ8 125 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 TMEM126AQ9H061 195 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 FXYD6Q9H0Q3 95 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 SLC35B3Q9H1N7 401 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 CACFD1Q9UGQ2 172 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 LHFPL6Q9Y693 200 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 MGAM2Q2M2H8 2515 aa1.73□□□□□ -2.13
CD44-223ENST00000526553 A0A1B0GW64 132 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 GABARAPH6UMI1 98 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 H7C1C5 153 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 CORTO00230 105 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 PRH1P02810 166 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 AKAIN1P0CW23 69 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 S100A3P33764 101 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 ATP5G3P48201 142 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 SNRPGP62308 76 aaKnown RBP1.72□□□□□ -2.13
CD44-223ENST00000526553 CDK6Q00534 326 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 MORN2Q502X0 79 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 PYY3Q5JQD4 70 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 SPANXN5Q5MJ07 72 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 NCMAPQ5T1S8 102 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 BCL2L15Q5TBC7 163 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 ALKAL2Q6UX46 152 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 ZNF826PQ6ZT77 177 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 SLC25A26Q70HW3 274 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 LRRC18Q8N456 261 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 OR52R1Q8NGF1 315 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 OR51A4Q8NGJ6 313 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 OR5D16Q8NGK9 328 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 TSLPQ969D9 159 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 SLAMF6Q96DU3 332 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 LINC00052Q96N35 136 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 SDF2Q99470 211 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 HIST1H2BLQ99880 126 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 GINS3Q9BRX5 216 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 REG4Q9BYZ8 158 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 NMES1Q9C002 83 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 SH3BGRL3Q9H299 93 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 TMEM133Q9H2Q1 129 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 FKBP11Q9NYL4 201 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 PRNDQ9UKY0 176 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 EXPH5Q8NEV8 1989 aa1.72□□□□□ -2.13
CD44-223ENST00000526553 WNK2Q9Y3S1 2297 aa1.71□□□□□ -2.13
CD44-223ENST00000526553 TRAV1-2A0A0B4J238 106 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 A0A0G2JMM0 328 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 A0A1W2PPB8 328 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 A0A1W2PRS3 328 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 C7orf77A4D0Y5 90 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 TMEM212A6NML5 194 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 KIR3DP1A8MWS1 328 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 F8W1H4 67 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 OVOL1O14753 267 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 CYB5AP00167 134 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 GYPAP02724 150 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 MT-ND6P03923 174 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 NMBP08949 121 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 NBEAP1P0C6P0 100 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 SFTA3P0C7M3 94 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 SRP14P37108 136 aaKnown RBP1.71□□□□□ -2.14
CD44-223ENST00000526553 RHOBP62745 196 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 SEC11AP67812 179 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 NNATQ16517 81 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 RRN3P1Q2M238 152 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 KRTAP13-4Q3LI77 160 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 CCSMST1Q4G0I0 132 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 OCIAD2Q56VL3 154 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 PCOTHQ58A44 107 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 TMEM128Q5BJH2 165 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 COA5Q86WW8 74 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 TEX29Q8N6K0 151 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 C3orf56Q8N813 242 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 YPEL2Q96QA6 119 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 OR2J1Q9GZK6 312 aa1.71□□□□□ -2.14
CD44-223ENST00000526553 SOX21Q9Y651 276 aaPredicted RBP1.71□□□□□ -2.14
CD44-223ENST00000526553 PRKDCP78527 4128 aaKnown RBP1.71□□□□□ -2.14
CD44-223ENST00000526553 TRRAPQ9Y4A5 3859 aa1.7□□□□□ -2.14
CD44-223ENST00000526553 TMEM189A5PLL7 270 aa1.7□□□□□ -2.14
CD44-223ENST00000526553 DEGS1O15121 323 aa1.7□□□□□ -2.14
CD44-223ENST00000526553 OR1I1O60431 355 aa1.7□□□□□ -2.14
CD44-223ENST00000526553 NDUFB6O95139 128 aa1.7□□□□□ -2.14
CD44-223ENST00000526553 GPX2P18283 190 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms