RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 CAMK2N2Q96S95 79 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 DYNLRB1Q9NP97 96 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 CDC42SE1Q9NRR8 79 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 PRO1854Q9UHT4 67 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 UBE2D4Q9Y2X8 147 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 SNURFQ9Y675 71 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 S4R3C0 116 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 TRPM7Q96QT4 1865 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 TULP4Q9NRJ4 1543 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 GPATCH8Q9UKJ3 1502 aaKnown RBP1.45□□□□□ -2.18
CD44-216ENST00000525293 MYOM1P52179 1685 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 ALS2Q96Q42 1657 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 TANC2Q9HCD6 1990 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 SCN8AQ9UQD0 1980 aa1.45□□□□□ -2.18
CD44-216ENST00000525293 LAMB1P07942 1786 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 ANKRD36CQ5JPF3 1778 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 ALKQ9UM73 1620 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 CD163L1Q9NR16 1453 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 DOCK1Q14185 1865 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 UBR1Q8IWV7 1749 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 IGKV3D-7A0A0C4DH55 119 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 TRBV10-3A0A0K0K1G6 114 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 SH2D1AO60880 128 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 IL9P15248 144 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 EDDM3BP56851 147 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 PLGLAQ15195 96 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 ATXN8Q156A1 80 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 PSMG4Q5JS54 123 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 C10orf128Q5T292 105 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 FAM27BQ5VT28 67 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 DYNAPQ8N1N2 210 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 FDCSPQ8NFU4 85 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 CYP4F30PQ9H0H9 118 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 XAGE1AQ9HD64 81 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 EXPH5Q8NEV8 1989 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 TSC2P49815 1807 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 NUP98P52948 1817 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 NAV3Q8IVL0 2385 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 PIK3C2AO00443 1686 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 DSCAML1Q8TD84 2053 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 STAB1Q9NY15 2570 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 PAPPAQ13219 1627 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 VWFP04275 2813 aa1.44□□□□□ -2.18
CD44-216ENST00000525293 PDCD11Q14690 1871 aaKnown RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 COL24A1Q17RW2 1714 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 WDR90Q96KV7 1748 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 ZFC3H1O60293 1989 aaKnown RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 ADGRB2O60241 1585 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 PDE4DIPQ5VU43 2346 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 IGLV3-16A0A075B6K0 115 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 IGKV1D-37A0A075B6S9 117 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 IGHV3-73A0A0B4J1V6 119 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 IGHV3-66A0A0C4DH42 116 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 LRCOL1A6NCL2 159 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 ZNF815PA8K554 130 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 A8MUU9 505 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 C17orf98A8MV24 154 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 TMEM14DPA8MWL7 114 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 K7ERS5 55 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 HMGA1P17096 107 aaKnown RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 FCER1GP30273 86 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 SNRPGP62308 76 aaKnown RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 MIR22HGQ0VDD5 57 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 NNATQ16517 81 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 DEFB113Q30KQ7 82 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 NTM-AS1Q6ZSK4 140 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 CLECL1Q8IZS7 167 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 C15orf56Q8N910 161 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 Q8TAT8 98 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 FAM167A-AS1Q96KT0 104 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 TMEM14BQ9NUH8 114 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 ICOSQ9Y6W8 199 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 WDFY4Q6ZS81 3184 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 ANKHD1Q8IWZ3 2542 aaKnown RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 OBSL1O75147 1896 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 LAMA2P24043 3122 aaKnown RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 EIF2AK4Q9P2K8 1649 aaKnown RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 TNRC18O15417 2968 aaPredicted RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 KIAA1549Q9HCM3 1950 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 POLR1AO95602 1720 aaPredicted RBP1.43□□□□□ -2.18
CD44-216ENST00000525293 MRC1P22897 1456 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 BTAF1O14981 1849 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 ARFGEF1Q9Y6D6 1849 aa1.43□□□□□ -2.18
CD44-216ENST00000525293 ABCC8Q09428 1581 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 MAST1Q9Y2H9 1570 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 ADAMTS7Q9UKP4 1686 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 ASH1LQ9NR48 2969 aaKnown RBP1.42□□□□□ -2.18
CD44-216ENST00000525293 GTF3C1Q12789 2109 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 SLIT2O94813 1529 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 ATP7AQ04656 1500 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 IGKV1OR2-108A0A075B7D4 117 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 IGHV3-15A0A0B4J1V0 119 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 CXorf51AA0A1B0GTR3 108 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 A6NDX4 124 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 PSCAO43653 123 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 SPINK4O60575 86 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 WISP3O95389 354 aaPredicted RBP1.42□□□□□ -2.18
CD44-216ENST00000525293 IGHV1-46P01743 117 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 LINC00315P59091 139 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 EIF4EBP1Q13541 118 aaPredicted RBP1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms