RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 COTL1Q14019 142 aa11.34□□□□□ -0.59
DDX41-217ENST00000515562 C20orf203Q8NBC4 194 aa11.34□□□□□ -0.59
DDX41-217ENST00000515562 OCC1Q8TAD7 63 aa11.34□□□□□ -0.59
DDX41-217ENST00000515562 AMTP48728 403 aa11.33□□□□□ -0.6
DDX41-217ENST00000515562 CLRN3Q8NCR9 226 aa11.33□□□□□ -0.6
DDX41-217ENST00000515562 IGLV10-54A0A075B6I4 117 aa11.32□□□□□ -0.6
DDX41-217ENST00000515562 J3QL48 77 aa11.32□□□□□ -0.6
DDX41-217ENST00000515562 ALKAL2Q6UX46 152 aa11.32□□□□□ -0.6
DDX41-217ENST00000515562 SMIM15Q7Z3B0 74 aa11.32□□□□□ -0.6
DDX41-217ENST00000515562 IGLV4-60A0A075B6I1 120 aa11.31□□□□□ -0.6
DDX41-217ENST00000515562 C9orf163Q8N9P6 203 aa11.31□□□□□ -0.6
DDX41-217ENST00000515562 GATD1Q8NB37 220 aa11.31□□□□□ -0.6
DDX41-217ENST00000515562 GTSF1Q8WW33 167 aa11.31□□□□□ -0.6
DDX41-217ENST00000515562 TEX261Q6UWH6 196 aa11.3□□□□□ -0.6
DDX41-217ENST00000515562 FAM231DQ6ZW35 169 aa11.3□□□□□ -0.6
DDX41-217ENST00000515562 LYPD6BQ8NI32 183 aa11.3□□□□□ -0.6
DDX41-217ENST00000515562 TRAV26-2A0A0B4J265 109 aa11.29□□□□□ -0.6
DDX41-217ENST00000515562 GATCO43716 136 aaKnown RBP11.29□□□□□ -0.6
DDX41-217ENST00000515562 hCG_2014768A0A024R1R8 64 aa11.28□□□□□ -0.6
DDX41-217ENST00000515562 A8MWL6 223 aa11.28□□□□□ -0.6
DDX41-217ENST00000515562 KRTAP29-1A8MX34 341 aaPredicted RBP11.28□□□□□ -0.6
DDX41-217ENST00000515562 NCR2O95944 276 aa11.28□□□□□ -0.6
DDX41-217ENST00000515562 CNBPP62633 177 aaKnown RBP11.28□□□□□ -0.6
DDX41-217ENST00000515562 CT83Q5H943 113 aa11.28□□□□□ -0.6
DDX41-217ENST00000515562 GFRA4Q9GZZ7 299 aa11.28□□□□□ -0.6
DDX41-217ENST00000515562 hDV102S1A0JD36 115 aa11.27□□□□□ -0.61
DDX41-217ENST00000515562 KRTAP10-4P60372 401 aaPredicted RBP11.27□□□□□ -0.61
DDX41-217ENST00000515562 CEBPGP53567 150 aa11.26□□□□□ -0.61
DDX41-217ENST00000515562 BORCS7Q96B45 105 aa11.26□□□□□ -0.61
DDX41-217ENST00000515562 RPL39LQ96EH5 51 aaKnown RBP11.26□□□□□ -0.61
DDX41-217ENST00000515562 AP5S1Q9NUS5 200 aa11.26□□□□□ -0.61
DDX41-217ENST00000515562 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.25□□□□□ -0.61
DDX41-217ENST00000515562 H7C423 109 aa11.25□□□□□ -0.61
DDX41-217ENST00000515562 NDUFS6O75380 124 aaKnown RBP11.25□□□□□ -0.61
DDX41-217ENST00000515562 APCSP02743 223 aa11.25□□□□□ -0.61
DDX41-217ENST00000515562 AMMECR1LQ6DCA0 310 aa11.25□□□□□ -0.61
DDX41-217ENST00000515562 SMIM7Q9BQ49 75 aa11.25□□□□□ -0.61
DDX41-217ENST00000515562 EIF5A2Q9GZV4 153 aaKnown RBP11.25□□□□□ -0.61
DDX41-217ENST00000515562 SDHAF1A6NFY7 115 aa11.24□□□□□ -0.61
DDX41-217ENST00000515562 FOXA3P55318 350 aaPredicted RBP11.24□□□□□ -0.61
DDX41-217ENST00000515562 SDIM1Q6ZPB5 146 aa11.24□□□□□ -0.61
DDX41-217ENST00000515562 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.24□□□□□ -0.61
DDX41-217ENST00000515562 RPL37AP61513 92 aaKnown RBP11.23□□□□□ -0.61
DDX41-217ENST00000515562 IGHV3-64A0A075B6Q5 118 aa11.22□□□□□ -0.61
DDX41-217ENST00000515562 TRBV6-5A0A0K0K1A5 114 aa11.22□□□□□ -0.61
DDX41-217ENST00000515562 CFAP161Q6P656 301 aa11.22□□□□□ -0.61
DDX41-217ENST00000515562 LINC01551Q86U37 167 aa11.22□□□□□ -0.61
DDX41-217ENST00000515562 TSKUQ8WUA8 353 aa11.22□□□□□ -0.61
DDX41-217ENST00000515562 FAM210AQ96ND0 272 aa11.22□□□□□ -0.61
DDX41-217ENST00000515562 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.21□□□□□ -0.61
DDX41-217ENST00000515562 IGKV3OR2-268A0A0C4DH90 116 aa11.21□□□□□ -0.61
DDX41-217ENST00000515562 IGKV2-29A2NJV5 120 aaPredicted RBP11.21□□□□□ -0.61
DDX41-217ENST00000515562 FAM231BA6NCW3 169 aa11.21□□□□□ -0.61
DDX41-217ENST00000515562 GAGE12HA6NDE8 117 aa11.21□□□□□ -0.61
DDX41-217ENST00000515562 I3L3M4 83 aa11.21□□□□□ -0.61
DDX41-217ENST00000515562 ZNF25P17030 456 aaPredicted RBP11.21□□□□□ -0.61
DDX41-217ENST00000515562 CIRBPQ14011 172 aaKnown RBP11.21□□□□□ -0.61
DDX41-217ENST00000515562 RNASEKQ6P5S7 137 aaKnown RBP11.21□□□□□ -0.61
DDX41-217ENST00000515562 A0A1B0GUT8 65 aa11.2□□□□□ -0.62
DDX41-217ENST00000515562 ZNF727A8MUV8 499 aa11.2□□□□□ -0.62
DDX41-217ENST00000515562 HIGD1CA8MV81 97 aa11.2□□□□□ -0.62
DDX41-217ENST00000515562 FGF6P10767 208 aa11.2□□□□□ -0.62
DDX41-217ENST00000515562 PANO1I0J062 215 aa11.19□□□□□ -0.62
DDX41-217ENST00000515562 OXTP01178 125 aa11.19□□□□□ -0.62
DDX41-217ENST00000515562 PMCHP20382 165 aa11.19□□□□□ -0.62
DDX41-217ENST00000515562 C15orf56Q8N910 161 aa11.19□□□□□ -0.62
DDX41-217ENST00000515562 CHCHD10Q8WYQ3 142 aaPredicted RBP11.19□□□□□ -0.62
DDX41-217ENST00000515562 BTF3L4Q96K17 158 aa11.19□□□□□ -0.62
DDX41-217ENST00000515562 TMEM191AQ9H0A3 160 aa11.19□□□□□ -0.62
DDX41-217ENST00000515562 ST20Q9HBF5 79 aa11.19□□□□□ -0.62
DDX41-217ENST00000515562 OSTCQ9NRP0 149 aa11.19□□□□□ -0.62
DDX41-217ENST00000515562 MRAP2Q96G30 205 aa11.18□□□□□ -0.62
DDX41-217ENST00000515562 RNF185Q96GF1 192 aa11.18□□□□□ -0.62
DDX41-217ENST00000515562 TMEM101Q96IK0 257 aa11.18□□□□□ -0.62
DDX41-217ENST00000515562 SLPIP03973 132 aa11.17□□□□□ -0.62
DDX41-217ENST00000515562 SRP19P09132 144 aaKnown RBP11.17□□□□□ -0.62
DDX41-217ENST00000515562 TSHBP01222 138 aa11.16□□□□□ -0.62
DDX41-217ENST00000515562 OR5A1Q8NGJ0 315 aa11.16□□□□□ -0.62
DDX41-217ENST00000515562 SPACA4Q8TDM5 124 aa11.16□□□□□ -0.62
DDX41-217ENST00000515562 GVQW2A0A096LPI5 108 aaPredicted RBP11.15□□□□□ -0.62
DDX41-217ENST00000515562 TRBV27A0A0K0K1C4 114 aa11.15□□□□□ -0.62
DDX41-217ENST00000515562 ESDP10768 282 aa11.15□□□□□ -0.62
DDX41-217ENST00000515562 TMEM242Q9NWH2 141 aa11.15□□□□□ -0.62
DDX41-217ENST00000515562 GAS8-AS1O95177 125 aa11.14□□□□□ -0.63
DDX41-217ENST00000515562 RAB4AP20338 218 aa11.14□□□□□ -0.63
DDX41-217ENST00000515562 RPS10P46783 165 aaKnown RBP11.14□□□□□ -0.63
DDX41-217ENST00000515562 RIGQ13278 110 aa11.14□□□□□ -0.63
DDX41-217ENST00000515562 HIGD2BQ4VC39 106 aa11.14□□□□□ -0.63
DDX41-217ENST00000515562 FAM74A3Q4VXF1 159 aa11.14□□□□□ -0.63
DDX41-217ENST00000515562 AMN1Q8IY45 258 aa11.14□□□□□ -0.63
DDX41-217ENST00000515562 DPH3Q96FX2 82 aa11.14□□□□□ -0.63
DDX41-217ENST00000515562 V9GYV3 84 aa11.14□□□□□ -0.63
DDX41-217ENST00000515562 LRP1Q07954 4544 aaKnown RBP11.13□□□□□ -0.63
DDX41-217ENST00000515562 PPP1R17O96001 155 aa11.13□□□□□ -0.63
DDX41-217ENST00000515562 CHTF8P0CG12 524 aa11.13□□□□□ -0.63
DDX41-217ENST00000515562 POLR2KP53803 58 aaKnown RBP11.13□□□□□ -0.63
DDX41-217ENST00000515562 FOXI1Q12951 378 aa11.13□□□□□ -0.63
DDX41-217ENST00000515562 MRPL52Q86TS9 123 aaKnown RBP11.13□□□□□ -0.63
DDX41-217ENST00000515562 ISOC2Q96AB3 205 aa11.13□□□□□ -0.63
DDX41-217ENST00000515562 PKHD1L1Q86WI1 4243 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms