RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 TRBV7-3A0A075B6L6 115 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 TRBV6-4A0A1B0GX49 114 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 K7EQD1 137 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 CTAG1AP78358 180 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 PMVKQ15126 192 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 PAPPA-AS1Q5QFB9 102 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 SLC25A34Q6PIV7 304 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 C12orf54Q6X4T0 127 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 C3orf56Q8N813 242 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 ZNF479Q96JC4 524 aa5.97□□□□□ -1.45
RNF4-220ENST00000513578 MRPL35Q9NZE8 188 aaKnown RBP5.97□□□□□ -1.45
RNF4-220ENST00000513578 CHTOPQ9Y3Y2 248 aaKnown RBP5.97□□□□□ -1.45
RNF4-220ENST00000513578 TENM1Q9UKZ4 2725 aa5.96□□□□□ -1.46
RNF4-220ENST00000513578 PRSS29PA6NIE9 313 aa5.96□□□□□ -1.46
RNF4-220ENST00000513578 LYRM9A8MSI8 78 aa5.96□□□□□ -1.46
RNF4-220ENST00000513578 M0R143 59 aa5.96□□□□□ -1.46
RNF4-220ENST00000513578 SIVA1O15304 175 aa5.96□□□□□ -1.46
RNF4-220ENST00000513578 HNRNPA3P51991 378 aaKnown RBP5.96□□□□□ -1.46
RNF4-220ENST00000513578 RPL36AP83881 106 aaKnown RBP5.96□□□□□ -1.46
RNF4-220ENST00000513578 ANKRD39Q53RE8 183 aa5.96□□□□□ -1.46
RNF4-220ENST00000513578 DAZ4Q86SG3 579 aaKnown RBP5.96□□□□□ -1.46
RNF4-220ENST00000513578 BOD1L2Q8IYS8 172 aa5.96□□□□□ -1.46
RNF4-220ENST00000513578 RPL36ALQ969Q0 106 aaKnown RBP5.96□□□□□ -1.46
RNF4-220ENST00000513578 TIMM21Q9BVV7 248 aa5.96□□□□□ -1.46
RNF4-220ENST00000513578 DAZ3Q9NR90 486 aaKnown RBP5.96□□□□□ -1.46
RNF4-220ENST00000513578 GAGE12BA1L429 117 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 GAGE7O76087 117 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 GAGE12FP0CL80 117 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 GAGE12GP0CL81 117 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 GAGE12IP0CL82 117 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 FGF6P10767 208 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 MIFP14174 115 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 UBE2D3P61077 147 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 UBE2D2P62837 147 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 RPL39P62891 51 aaKnown RBP5.95□□□□□ -1.46
RNF4-220ENST00000513578 COTL1Q14019 142 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 FHL2Q14192 279 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 SLC25A29Q8N8R3 303 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 C2orf88Q9BSF0 95 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 CHCHD7Q9BUK0 85 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 CST9LQ9H4G1 147 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 SPANXA1Q9NS26 97 aa5.95□□□□□ -1.46
RNF4-220ENST00000513578 TRGV2A0A075B6R0 118 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 LINC00694P0DN24 101 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 ZC2HC1BQ5TFG8 222 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 NFE4Q86UQ8 179 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 STPG4Q8N801 248 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 ZNRF2Q8NHG8 242 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 RNF183Q96D59 192 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 AMELXQ99217 191 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 SNHG12Q9BXW3 62 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 GTSF1LQ9H1H1 148 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 Q9UF83 564 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 NOTCH3Q9UM47 2321 aa5.94□□□□□ -1.46
RNF4-220ENST00000513578 IGLV4-69A0A075B6H9 119 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 IGLV4-3A0A075B6K6 122 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 H7C423 109 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 IGHV4-30-4P0DP06 118 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 MRPS36P82909 103 aaKnown RBP5.93□□□□□ -1.46
RNF4-220ENST00000513578 SMAGPQ0VAQ4 97 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 TMEM97Q5BJF2 176 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 SBSPONQ8IVN8 264 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 FAM104AQ969W3 186 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 UBE2D4Q9Y2X8 147 aa5.93□□□□□ -1.46
RNF4-220ENST00000513578 CSDC2Q9Y534 153 aaKnown RBP5.93□□□□□ -1.46
RNF4-220ENST00000513578 TRGV4A0A0C4DH28 118 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 C11orf86A6NJI1 115 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 E9PLD3 99 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 EREGO14944 169 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 C2orf91Q6ZV80 131 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 Q8NAQ8 132 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 OR11H2Q8NH07 326 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 PRADC1Q9BSG0 188 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 VCX2Q9H322 139 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 HIGD1BQ9P298 99 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 VWFP04275 2813 aa5.92□□□□□ -1.46
RNF4-220ENST00000513578 TEX48A0A1B0GUV7 120 aa5.91□□□□□ -1.46
RNF4-220ENST00000513578 KRTAP10-11P60412 298 aa5.91□□□□□ -1.46
RNF4-220ENST00000513578 DEFB135Q30KP9 77 aa5.91□□□□□ -1.46
RNF4-220ENST00000513578 FAM19A3Q7Z5A8 133 aa5.91□□□□□ -1.46
RNF4-220ENST00000513578 PHLDA1Q8WV24 401 aaPredicted RBP5.91□□□□□ -1.46
RNF4-220ENST00000513578 IGKV2D-26A0A0A0MRZ7 120 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 IGHV4-28A0A0C4DH34 117 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 GAGE12JA6NER3 117 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 HERVK_113P61574 105 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 GAGE1Q13065 139 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 GAGE4Q13068 117 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 GAGE5Q13069 117 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 GAGE13Q4V321 117 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 SAMD5Q5TGI4 173 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 FAM222AQ5U5X8 452 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 NTM-AS1Q6ZSK4 140 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 PRO0255Q9UI72 69 aa5.9□□□□□ -1.46
RNF4-220ENST00000513578 IGHV3-38A0A0C4DH36 116 aa5.89□□□□□ -1.47
RNF4-220ENST00000513578 NMUP48645 174 aa5.89□□□□□ -1.47
RNF4-220ENST00000513578 EMP1P54849 157 aa5.89□□□□□ -1.47
RNF4-220ENST00000513578 LCE2AQ5TA79 106 aaPredicted RBP5.89□□□□□ -1.47
RNF4-220ENST00000513578 PCP2Q8IVA1 136 aa5.89□□□□□ -1.47
RNF4-220ENST00000513578 DEFB104AQ8WTQ1 72 aa5.89□□□□□ -1.47
RNF4-220ENST00000513578 OPRPNQ99935 248 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms