RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SOSTDC1Q6X4U4 206 aa8.45□□□□□ -1.06
LIMCH1-217ENST00000512946 WFDC13Q8IUB5 93 aa8.45□□□□□ -1.06
LIMCH1-217ENST00000512946 TRBV6-4A0A1B0GX49 114 aa8.45□□□□□ -1.06
LIMCH1-217ENST00000512946 IL17DQ8TAD2 202 aa8.45□□□□□ -1.06
LIMCH1-217ENST00000512946 LINC00467Q9BRT7 94 aa8.44□□□□□ -1.06
LIMCH1-217ENST00000512946 UBE2D1P51668 147 aa8.44□□□□□ -1.06
LIMCH1-217ENST00000512946 M0QY20 66 aa8.44□□□□□ -1.06
LIMCH1-217ENST00000512946 IGHV4-30-2A0A087WSY4 118 aa8.44□□□□□ -1.06
LIMCH1-217ENST00000512946 LINC00322Q6ZN03 302 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-217ENST00000512946 TMEM105Q8N8V8 129 aa8.44□□□□□ -1.06
LIMCH1-217ENST00000512946 ZNF80P51504 273 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-217ENST00000512946 MRGPRG-AS1Q2M3A8 158 aa8.43□□□□□ -1.06
LIMCH1-217ENST00000512946 LINC00574Q9H8X3 128 aa8.43□□□□□ -1.06
LIMCH1-217ENST00000512946 KLK5Q9Y337 293 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-217ENST00000512946 DOCK3Q8IZD9 2030 aa8.43□□□□□ -1.06
LIMCH1-217ENST00000512946 RPL28P46779 137 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-217ENST00000512946 SLURP1P55000 103 aa8.43□□□□□ -1.06
LIMCH1-217ENST00000512946 F8W735 103 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 C3orf84H3BNL1 204 aa8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 SMIM11BQ8TCY0 68 aa8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 C4orf3Q8WVX3 66 aa8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 IGLV2-14P01704 120 aa8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 CEMP1Q6PRD7 247 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 PRR4Q16378 134 aa8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 CRYGAP11844 174 aa8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 LY6DQ14210 128 aa8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 LINC00208Q96KT6 92 aa8.42□□□□□ -1.06
LIMCH1-217ENST00000512946 TRBV7-6A0A0J9YX20 115 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 SP5Q6BEB4 398 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 CD164L2Q6UWJ8 174 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 SIRPDQ9H106 197 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 LINC00269Q8N2A0 174 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 FER1L5A0AVI2 2057 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 SYCNQ0VAF6 134 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 TMEM254Q8TBM7 123 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 Q96MF0 132 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 ADAMTSL1Q8N6G6 1762 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 TRBV6-8A0A0A6YYG3 113 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 ODF3L1Q8IXM7 274 aa8.41□□□□□ -1.06
LIMCH1-217ENST00000512946 MALRD1Q5VYJ5 2156 aa8.4□□□□□ -1.06
LIMCH1-217ENST00000512946 GREB1Q4ZG55 1949 aa8.4□□□□□ -1.06
LIMCH1-217ENST00000512946 DENND4AQ7Z401 1863 aa8.4□□□□□ -1.06
LIMCH1-217ENST00000512946 SHANK1Q9Y566 2161 aa8.4□□□□□ -1.06
LIMCH1-217ENST00000512946 TNRC6BQ9UPQ9 1833 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-217ENST00000512946 FAM215AQ9Y5M1 114 aa8.4□□□□□ -1.07
LIMCH1-217ENST00000512946 FAM30AQ9NZY2 134 aa8.39□□□□□ -1.07
LIMCH1-217ENST00000512946 PLXNA1Q9UIW2 1896 aa8.39□□□□□ -1.07
LIMCH1-217ENST00000512946 GVINP1Q7Z2Y8 2422 aa8.39□□□□□ -1.07
LIMCH1-217ENST00000512946 ZNF73O43830 326 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-217ENST00000512946 CNFNQ9BYD5 112 aa8.39□□□□□ -1.07
LIMCH1-217ENST00000512946 POLR2KP53803 58 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-217ENST00000512946 K7EQG2 157 aa8.38□□□□□ -1.07
LIMCH1-217ENST00000512946 Q8IZM0 81 aa8.38□□□□□ -1.07
LIMCH1-217ENST00000512946 Q8N3U1 123 aa8.38□□□□□ -1.07
LIMCH1-217ENST00000512946 MAP6D1Q9H9H5 199 aa8.38□□□□□ -1.07
LIMCH1-217ENST00000512946 PKDREJQ9NTG1 2253 aa8.38□□□□□ -1.07
LIMCH1-217ENST00000512946 MYLKQ15746 1914 aa8.38□□□□□ -1.07
LIMCH1-217ENST00000512946 CACNA1HO95180 2353 aa8.38□□□□□ -1.07
LIMCH1-217ENST00000512946 FSTL3O95633 263 aa8.37□□□□□ -1.07
LIMCH1-217ENST00000512946 CACNA1EQ15878 2313 aa8.37□□□□□ -1.07
LIMCH1-217ENST00000512946 PLCE1Q9P212 2302 aa8.37□□□□□ -1.07
LIMCH1-217ENST00000512946 Q8N6K4 173 aa8.37□□□□□ -1.07
LIMCH1-217ENST00000512946 A8MZ25 164 aa8.36□□□□□ -1.07
LIMCH1-217ENST00000512946 IGLV4-69A0A075B6H9 119 aa8.36□□□□□ -1.07
LIMCH1-217ENST00000512946 PLAC8L1A1L4L8 177 aa8.36□□□□□ -1.07
LIMCH1-217ENST00000512946 PSPHP1O15172 72 aa8.36□□□□□ -1.07
LIMCH1-217ENST00000512946 PPDPFQ9H3Y8 114 aa8.36□□□□□ -1.07
LIMCH1-217ENST00000512946 RITA1Q96K30 269 aa8.36□□□□□ -1.07
LIMCH1-217ENST00000512946 GREB1LQ9C091 1923 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-217ENST00000512946 DOCK7Q96N67 2140 aa8.35□□□□□ -1.07
LIMCH1-217ENST00000512946 A0A087WZ39 114 aa8.35□□□□□ -1.07
LIMCH1-217ENST00000512946 TSHBP01222 138 aa8.35□□□□□ -1.07
LIMCH1-217ENST00000512946 NANOS2P60321 138 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-217ENST00000512946 DEFB136Q30KP8 78 aa8.35□□□□□ -1.07
LIMCH1-217ENST00000512946 Q8N814 137 aa8.35□□□□□ -1.07
LIMCH1-217ENST00000512946 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.35□□□□□ -1.07
LIMCH1-217ENST00000512946 PCNX2A6NKB5 2137 aa8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 TRPM7Q96QT4 1865 aa8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 BRCA1P38398 1863 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 IGF1P05019 195 aa8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 SHISA2Q6UWI4 295 aa8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 Q6ZTI0 123 aa8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 Q6ZVQ6 151 aa8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 CACNA1BQ00975 2339 aa8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 USF3Q68DE3 2245 aa8.34□□□□□ -1.07
LIMCH1-217ENST00000512946 A0A0J9YWU9 116 aa8.34□□□□□ -1.08
LIMCH1-217ENST00000512946 LY6LH3BQJ8 138 aa8.34□□□□□ -1.08
LIMCH1-217ENST00000512946 A0A1B0GW54 56 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 COL6A6A6NMZ7 2263 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 IGKV2-24A0A0C4DH68 120 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 A6NDX4 124 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 F8WDY8 70 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 C22orf34Q6ZV56 151 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 SMAD5-AS1Q9Y6J3 95 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 E7EUB6 86 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 CRIP1P50238 77 aa8.33□□□□□ -1.08
LIMCH1-217ENST00000512946 ZGRF1Q86YA3 2104 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 IGFL2Q6UWQ7 119 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 UNQ9165/PRO28630Q6UXU0 137 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 Q6ZS46 218 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms