RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 IGKV1-16P04430 117 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 FHL1Q13642 323 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 PATE2Q6UY27 113 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 CAMK2N1Q7Z7J9 78 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 LINC00482Q8N8I6 264 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 LINC01356Q8N9X3 169 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 NUMA1Q14980 2115 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 IGHV4-59P01825 116 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 SEM1Q6ZVN7 128 aa2.65□□□□□ -1.99
USP53-205ENST00000509769 TRIP12Q14669 1992 aaPredicted RBP2.64□□□□□ -1.99
USP53-205ENST00000509769 IGLV3-9A0A075B6K5 115 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 IGHV3-38A0A0C4DH36 116 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 DNAJC9-AS1A6NH13 148 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 EFNA2O43921 213 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 PRB2P02812 416 aaPredicted RBP2.64□□□□□ -1.99
USP53-205ENST00000509769 DEFB130BP0DP73 79 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 DEFB130AP0DP74 79 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 RPL39P62891 51 aaKnown RBP2.64□□□□□ -1.99
USP53-205ENST00000509769 Q1T7F1 81 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 TTTY13Q9BZ97 58 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 MSRB1Q9NZV6 116 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 HHLA3Q9XRX5 114 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 DOCK5Q9H7D0 1870 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 GNRH2O43555 120 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 LINC00336Q6ZUF6 198 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 C11orf72Q8NBR9 251 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 C1orf64Q8NEQ6 169 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 LINC00574Q9H8X3 128 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 PRO0461Q9UI25 63 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 IGHV3OR16-9A0A0B4J2B5 98 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 IGHV3-16A0A0C4DH30 117 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 POLR2KP53803 58 aaKnown RBP2.64□□□□□ -1.99
USP53-205ENST00000509769 DMAC1Q96GE9 116 aa2.64□□□□□ -1.99
USP53-205ENST00000509769 IGLV4-69A0A075B6H9 119 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 IGKV1-17P01599 117 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 LINC00205P59089 165 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 WFDC13Q8IUB5 93 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 DCANP1Q8TF63 244 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 CRIPTQ9P021 101 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 PCM1Q15154 2024 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 MAP1BP46821 2468 aaKnown RBP2.63□□□□□ -1.99
USP53-205ENST00000509769 MYO16Q9Y6X6 1858 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 IGLV1-44P01699 117 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 EGFEM1PQ0D2K5 195 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 GDF5OSQ5U4N7 250 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 LINC01600Q96MT4 127 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 GOLGA4Q13439 2230 aaKnown RBP2.63□□□□□ -1.99
USP53-205ENST00000509769 GREB1LQ9C091 1923 aaPredicted RBP2.63□□□□□ -1.99
USP53-205ENST00000509769 HEATR5BQ9P2D3 2071 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 IGHV3OR16-10A0A075B7F0 116 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 C3orf84H3BNL1 204 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 ZFP36P26651 326 aaKnown RBP2.63□□□□□ -1.99
USP53-205ENST00000509769 PRB3Q04118 309 aaPredicted RBP2.63□□□□□ -1.99
USP53-205ENST00000509769 C1orf137Q5JT78 98 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 C9orf66Q5T8R8 295 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 C5orf56Q8N8D9 126 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 MDFIQ99750 246 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 OTOGLQ3ZCN5 2332 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 CACNA1HO95180 2353 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 H3BS24 57 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 M0QY20 66 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 MLANAQ16655 118 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 LUZP6Q538Z0 58 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 TMEM92Q6UXU6 159 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 CDKN2A-AS1Q9UH64 79 aa2.63□□□□□ -1.99
USP53-205ENST00000509769 RNASE3P12724 160 aaKnown RBP2.62□□□□□ -1.99
USP53-205ENST00000509769 LINC01554Q52M75 96 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 C9orf106Q8NAJ2 232 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 FLVCR1-AS1Q8TAF5 88 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 TICRRQ7Z2Z1 1910 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 IGHV3OR16-8A0A075B7F1 116 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 IGIPA6NJ69 53 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 FAM19A4Q96LR4 140 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 LINC00846Q9NV44 126 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 Q9UF83 564 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 SMAD5-AS1Q9Y6J3 95 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 CHD3Q12873 2000 aaKnown RBP2.62□□□□□ -1.99
USP53-205ENST00000509769 GVINP1Q7Z2Y8 2422 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 IGKV1OR2-108A0A075B7D4 117 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 TNFRSF13BO14836 293 aaPredicted RBP2.62□□□□□ -1.99
USP53-205ENST00000509769 MOBPQ13875 183 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 CTSZQ9UBR2 303 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 A0A087X002 238 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 TRAV22A0A0B4J277 110 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 B3GALT5-AS1P59052 145 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 REG3AQ06141 175 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 LINC00575Q6W349 94 aa2.62□□□□□ -1.99
USP53-205ENST00000509769 NOP10Q9NPE3 64 aaKnown RBP2.62□□□□□ -1.99
USP53-205ENST00000509769 BDP1A6H8Y1 2624 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 NUP205Q92621 2012 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 CLPSP04118 112 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 CGB3P0DN86 165 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 IGFL4Q6B9Z1 124 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 TP53BP1Q12888 1972 aaPredicted RBP2.61□□□□□ -1.99
USP53-205ENST00000509769 COL4A2P08572 1712 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 KIF26AQ9ULI4 1882 aaPredicted RBP2.61□□□□□ -1.99
USP53-205ENST00000509769 CGB7P0DN87 165 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 FAM19A1Q7Z5A9 133 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 C17orf82Q86X59 251 aaPredicted RBP2.61□□□□□ -1.99
USP53-205ENST00000509769 CHCHD10Q8WYQ3 142 aaPredicted RBP2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms